KEGG   Capra hircus (goat): 102173962
Entry
102173962         CDS       T02910                                 
Symbol
SYMPK
Name
(RefSeq) symplekin
  KO
K06100  symplekin
Organism
chx  Capra hircus (goat)
Pathway
chx03015  mRNA surveillance pathway
chx04530  Tight junction
Brite
KEGG Orthology (KO) [BR:chx00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    102173962 (SYMPK)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    102173962 (SYMPK)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:chx03021]
    102173962 (SYMPK)
   03019 Messenger RNA biogenesis [BR:chx03019]
    102173962 (SYMPK)
Transcription machinery [BR:chx03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     102173962 (SYMPK)
Messenger RNA biogenesis [BR:chx03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     102173962 (SYMPK)
    U7-dependent histone pre-mRNA processing factors
     102173962 (SYMPK)
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N PDS5 Cnd1 Cohesin_HEAT
Other DBs
NCBI-GeneID: 102173962
NCBI-ProteinID: XP_017918120
EnsemblRapid: ENSCHIG00000026784
UniProt: A0A452G9G2
Position
18:complement(54408673..54441932)
AA seq 1272 aa
MAASSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIR
THAIKFVEGLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLNVLKHPASLEFQAQITTLLVDLGTPQVEIARNMPSSKDARKRPRDDSDSTLKKM
KLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKPESVLIKRRLPAQGQAISVVGSLSSMSSLEEEAPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGL
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGVKGALDKYEDCLIRLLSGLQEKPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL
SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSAKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
SRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMAILEASGKQEPEAKEAPAGPLEEDDLEPLALAPPPAPRPPQDLIG
LRLAQEKALKRQLEEEQKLKPGGLGAPSSSSSSSSVRPGPPQSEEAIDFREEGPECETPA
IFISMDDDSGLTEAALLDSSLEGPLPKETAAGGLLSKEERSPQPLTAAGEDTMQTPSPAT
EEAGEPETKGNS
NT seq 3819 nt   +upstreamnt  +downstreamnt
atggcagccagcagtggggacagcgtcacacgccggagtgtggcatcacagttcttcact
caagaggaggggcctggcatcgatggcatgaccacatcagagagagtggtagatctcctg
aaccaggcggcactgatcaccaacgactcaaagatcacagtgctcaaacaggtgcaggaa
ctgatcatcaacaaagatcccacactactggacaacttcctggatgagatcatcgctttc
caggcagacaagtccatcgaagtgcgcaagtttgtcatcggcttcatcgaggaggcttgc
aagcgagacattgagctgctgctgaaactgatcgcgaacctcaacatgctcttgagggat
gagaatgtgaatgtggtgaagaaggccatcctcaccatgacccagctctacaaggtggcc
ctgcagtggatggtgaagtcacgggtgatcagtgagctccaggaggcctgctgggatatg
gtgtcagccatggctggggacatcatcctgctgctggactctgacaacgacggcatccgt
acccatgccatcaagttcgtggagggcctcatcgtcaccctctcgccccgcatggctgac
tcggaggtgccccgacgccaggagcacgacatcagcctggaccgcatccctcgtgaccac
ccctacatccagtacaatgtgctgtgggaagaaggcaaggcagccttggagcagctgctc
aagttcatggtgcaccctgctatctcctccatcaacctgaccacagccctgggctccctg
gccaatattgcccgccagaggcccatgttcatgtcggaggtgattcaggcctatgaaacc
ctccacgccaatctgcccccaacgctggccaaatctcaggtgagcagcgtgcgtaagaac
ctcaagttgcacctgttgaatgtgctgaagcacccagcgtccttggagttccaggctcag
atcaccaccctgctggtggacctgggcacgcctcaggtggagatcgcccgcaacatgccc
agcagcaaggatgcccgcaagcggccccgagacgactcggattccacgctcaagaagatg
aagctggagcccaacctgggggaagacgatgaggacaaggacttggagccaggcccctcg
ggaacctcgaaggcctcagcccagatctcaggccagtcagacacagacatcacggccgaa
ttcctccagcctctgctgacacccgacaacgtggccaatctggtcctcatcagcatggtg
tacctgcctgaggccatgcccgcctccttccaagcgatctacaccccagtggagtcagca
ggcactgaagcccagatcaagcacctggctcggctcatggccacgcagatgacggccgca
ggactggggccaggcgtggagcagaccaagcagtgcaaggaggagcccaaggaggagaag
gtggtgaagccagagagcgtcctgatcaagcggcgcctgcccgcccagggccaggccatc
tcggtagtgggctccctgagctccatgtcctccctagaggaggaggcaccccaggccaag
aggaggccggagcccattatccccgtcacgcagccccggctggcgggcgctggtgggcgc
aagaaaatcttccgcctaagtgacgtgctgaagcccctgacggacgcgcaggttgaggcc
atgaagctaggcgctgtgaagcggatcctgcgggccgagaaggctgtggcctgcagtggg
gccgcccaggtgcgcataaagatcctggccagcctggtgacgcagttcgactcgggcctg
aaggccgaggtcctgtccttcatcctggaggacgtccgggcccgcctggacctggccttc
gcctggctctaccaggagtacaacgcctacctcgcagctggcgtcaagggcgccctggac
aagtacgaggactgcctcatccgcctgctctccggcctgcaggagaagccggaccagaag
gacgggatcttcaccaaggttgtgctggaggcgccgctgatcaccgagagcgccctggag
gtgattcgcaagtactgcgaggacgagagtcgcacctacctgggcatgtccactctccga
gacctgatcttcaagcgcccatcccgccagttccagtacctgcatgtcctgctagacctc
agctcccacgagaaggacaaggtgcgttcccaggccttgctgttcatcaagcgcatgtac
gaaaaggaacagctgcgagagtacgtggagaagtttgccctcaactacctgcagctcttg
gtccaccccaacccgccgtcggtgctgtttggagccgacaaggacacagaggtggccgca
ccctggaccgaggagacggtgaagcagtgcctgtacctctatctggctctcctacctcag
aaccacaagctgatccatgagctggcggccgtgtacacggaggccatcgctgacatcaag
aggacagtgctgagggtcattgaacagccgatccgggggatgggcatgaactcaccagag
ctgctcctgctggtggagaactgtcccaagggggcggagacactggtcacacgctgtctg
cacagcctcacagacaaagtgcccccgtccccggagctggtgaagcgggtcagggatctc
taccacaagcgactgccagacgtccggttcctcatcccagtgctcaatgggctggagaag
aaggaagtgatccaggccctgccaaagctcatcaagctcaaccccatcgtggtgaaagaa
gtcttcaaccgcctgctgggaacccagcacggtgaagggaactcagccctgtcccccctg
aaccctggagagctgctcatcgccttacacaacattgactcagcaaagtgtgacatgaag
tccatcatcaaagccaccaacctgtgctttgcggagcggaacgtgtacacgtcggaggtg
ctggccgtggtgatgcagcaactgatggagcagagccccctgcccatgctgctcatgagg
accgtcatccagtccctgactatgtacccccgcctggggggcttcgtcatgaacatcctg
tcccggctcatcatgaagcaggtgtggaagtatcccaaggtgtgggagggcttcatcaag
tgctgtcagcgcaccaagccccagagcttccaggtcatcctgcagctcccaccccagcag
ctgggggccgtctttgacaagtgcccagagctccgggagcccctgctggcccacgtgcgc
tccttcaccccgcaccagcaagcacacatccccaactccatcatggccatcctggaggcc
agcggcaagcaggagccagaggctaaggaagcacctgccgggcccctggaagaggatgac
ttagagcctctggccctggcaccacctccggccccccgaccccctcaagatctcatcggc
ctgcggctggcccaggagaaggccttaaagcggcaactggaggaagaacagaagctgaag
cctgggggactgggagccccctcctcgtcctcgtcctcttcctcggtgcggccaggcccc
ccccagtcggaggaagccattgatttccgggaggaggggcctgagtgtgagaccccggcc
atcttcatcagcatggacgatgactcggggctgactgaggccgcactgctggactctagt
cttgagggacccctacctaaggaaactgcagcaggtggattgctttcaaaggaggagcgg
agcccccagcccctcacagctgctggagaagacacaatgcagacccccagccctgccact
gaggaagcaggcgaaccggaaaccaaggggaatagctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (9)   
   RefSeq(nuc) (3)   
   GenBank (3)   
   EMBL (3)   
Protein domain (5)   
   Pfam (5)   
All databases (29)   

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