KEGG   Capra hircus (goat): 102190013
Entry
102190013         CDS       T02910                                 
Symbol
USP40
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 40 isoform X3
  KO
K11869  ubiquitin carboxyl-terminal hydrolase 40 [EC:3.4.19.12]
Organism
chx  Capra hircus (goat)
Brite
KEGG Orthology (KO) [BR:chx00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:chx01002]
    102190013 (USP40)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:chx04121]
    102190013 (USP40)
Enzymes [BR:chx01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     102190013 (USP40)
Peptidases and inhibitors [BR:chx01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   102190013 (USP40)
Ubiquitin system [BR:chx04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    102190013 (USP40)
SSDB
Motif
Pfam: UCH UCH_1 DUF5772
Other DBs
NCBI-GeneID: 102190013
NCBI-ProteinID: XP_013818477
EnsemblRapid: ENSCHIG00000023695
Position
3:7545239..7627846
AA seq 1176 aa
MFGDLFEEDYSSVSNNNGKGKRLKTKALEPPAPREFTNLSGIRNQGGTCYLNSLLQTLHF
TPEFREALFSLGPEELGSLEDKDKPDAKVRIIPLQLQRLFAQLLLLDQAAASTADLTDSF
GWTSDEEMRQHDVQELNRILFSALETSLVGTSGHDLINRLYHGTIVNQIVCKECKNVSEK
QEDFLDLTVAVKNVSGLEDALWNMYVEEEVFDCDNLYHCGNCGRLVKAAKSAKLRKLPPF
LTISLLRFNFDFVKCERYKETSCYTFPLRINLKPFCEQSELDDLEYMYELFSVIIHKGGC
YGGHYHVYIKDVDHLGNWQFQEDKSKPDVNLEDIQNKEEIDDPLVILKAILLQEESNIIP
VDQLGQKLLKKIGISWNKKYRKQYGPLRKFLQLHSQIFLLSSDESTVRLLKDSSLQVESD
IQRNDQRLFKTLTSESLKLNDGPSCPHWFDINDSRVQPIKEKDIEQQFQGKESAYMLFYR
KSQLQRPPEARANPRYKVPCHLLSEMDAANIELQIKRAECDSTNNTVELHLHLGPHYHFF
NGALHPVVSQTESMWDLTFDKRKTLGDLRQSIFQLLEFWEGDMVLSVAKFVPAGLHVCQT
LNGDDLTLCEIEIADGEDIFVWNGVEVGGIQIPTGSNCEPLLLNVLHVATSSEGEECQQL
IESSHVFPSNAEIGTVFTALAIPEGVILINNTESRGEENWTTIPKEDLKKTFREQGLRNG
SSVLIQGSNDGNSLLTKQGKWINTVNEINWLQVKNLSQLESEEEQVKISATLNTVVFDIR
IKAIKELKLLKELAENSCLRPIDRNGKLLCPVPDRCTLKEAGLKMGSSLGLCPGKAPTSS
QLFLFFALGSDVHPGTEMEIIVEETISVRDCLKIMLDKCGLTGDTWHLRKMDWCFEAGEP
LCEEDAKLKELMICSGDTLLLIEGKLPPLGFLTVPIWWYQPRGPLPHWKDHQDQTNCTLS
QGRVWKASSTPGAPSDAHAEVSLWYLGDLEISEDATLGELKSQAMTLPSLEFSIPSPAFL
RAWTVESKRPGRLLRVHQQQLKEYKLGKRTEICLEPLQKEENLGPWDVLLRTQMRLPGER
AYSPPVDVLWDTARGWTASSLRQRVADVYSLPVEKIEIAKYFPEKFAWLPVSSWNQKTTK
RKKKKKQDNLQGAPYYLKDGDTIGVKARKMSENTAQ
NT seq 3531 nt   +upstreamnt  +downstreamnt
atgtttggggacctgtttgaagaagattattccagtgtgtcaaataataatggaaaaggg
aagagattaaagaccaaagctttggagccacctgctcctagagaattcaccaatttaagt
ggaatcagaaatcagggtggaacctgttacctcaattcccttcttcagactcttcatttc
acacctgaattcagagaagctttattctctcttggcccggaagagcttggttcgttagag
gacaaggataaacctgatgcaaaggtccgaatcatacctttgcagctacagcggctgttt
gcacagcttctcctcttagaccaggcagctgcatccacagccgacctcactgacagcttt
gggtggaccagtgatgaggaaatgaggcaacatgatgtgcaggaactgaatcgaattctc
tttagtgctttggaaacttctttagttggaacctccggccatgacctcatcaaccgtctc
tatcacggaaccattgttaaccagattgtttgtaaagaatgtaagaatgtcagtgaaaag
caggaagatttcctagatctaacagtagcagtcaaaaatgtatcaggtttggaagacgca
ctctggaacatgtatgtagaggaggaagtttttgactgtgacaacttataccactgtgga
aactgtggcaggctggttaaagccgcaaagtcggccaaattacgtaagctgcctcccttc
cttacaatttcattattaagatttaattttgattttgtgaagtgtgaacgatacaaggaa
acaagctgttacacattccctctccggatcaatctcaagcctttttgtgaacagagtgaa
ttagatgacttggaatatatgtatgagctcttctcagttattatacacaaaggtggttgc
tatggaggacattatcacgtgtatattaaagatgtcgatcatttgggaaactggcagttt
caagaggacaaaagtaaaccagatgtgaatttggaagatattcagaataaagaggagatt
gatgatccattggtgattttaaaagcaatcttattacaggaggagagtaatataattccc
gttgatcagctgggccagaaactcttgaagaagataggaatatcttggaataagaagtac
cgaaaacagtatggaccactgcgaaagtttttgcagcttcattctcagatatttctgctc
agttcagacgaaagtacagttcgtctattgaaggactcttctctccaggttgagtctgat
atccaaagaaatgatcaacgacttttcaagacacttacttcagaatccttaaagttaaat
gatgggccctcctgtcctcactggtttgatataaatgattccagagtccaaccaatcaag
gaaaaggatattgaacagcaatttcaaggaaaagaaagtgcctacatgctgttttatcgg
aaatcccagttacagagaccccctgaagctcgagctaacccacggtacaaggttccatgt
catttgctgagtgaaatggatgcagctaacattgaactacaaataaaaagggcagaatgt
gattctacaaacaatactgttgaattgcatctccacctcggcccccattatcatttcttc
aatggggctctgcacccagtagtgtctcaaacagaaagcatgtgggatttgacctttgat
aaaaggaaaactttaggagatcttcgacaatcaatatttcagctgttagaattttgggaa
ggagatatggttcttagtgttgcaaagtttgtaccagcaggacttcatgtttgccagaca
cttaatggagatgacctgacactgtgtgaaattgaaatcgctgatggagaagacatcttt
gtatggaatggggtagaggttggcggaatccagattccaaccggtagcaactgtgaacct
ctgcttttaaatgttcttcatgtagcaacaagcagtgagggagaggagtgtcagcagttg
atagaatcttcacatgtctttccatctaatgcagaaataggcactgtattcacagcccta
gcaattccagagggagtcatcttaatcaacaacactgaatctagaggtgaagagaactgg
accaccattcccaaggaagacttgaaaaagacattcagagagcaaggcctcagaaacgga
agctcagttttaatccagggctctaatgatggtaacagtttgttgacaaaacaagggaaa
tggatcaatactgtgaatgagatcaactggctccaagttaaaaatttaagccaattagaa
tctgaagaggagcaagttaaaatatcagcaactcttaacacagtggtgtttgatattcga
attaaagccataaaggaattaaaattattgaaggaactagctgagaacagctgtttgagg
cctattgatagaaatgggaaactgctttgtccagtgccagacagatgcactctgaaggaa
gcaggactgaagatggggagttcattgggactgtgtcctggaaaagcaccaacttcctct
cagctgttcctgtttttcgctttggggagtgatgttcaccctgggacagagatggagatc
atagtagaggaaacaatatctgtgagggattgtctgaagataatgctggacaaatgtggc
ctcacaggagacacatggcatttacgaaaaatggattggtgctttgaagctggggagcct
ttatgtgaagaagatgcaaagctgaaagagcttatgatctgttctggagatactttgctt
ttaattgaaggaaaacttcctcctctgggtttcctgacagtgcccatctggtggtaccag
cctcgggggccgctgcctcactggaaggatcaccaggaccagacgaattgtaccctttct
caaggccgcgtctggaaagccagttccactccaggtgctcccagtgacgcacacgcagaa
gtttccctctggtacttgggagaccttgaaatctcagaagatgccaccttaggggagctg
aagtctcaggccatgaccttgccctccttggagttttccatcccatccccagccttcctc
agagcctggacagtggaaagtaagcgcccaggccggcttttacgagtccaccagcagcag
ctcaaggaatataaattgggaaagagaactgagatctgcttagagccccttcagaaagaa
gaaaacctgggcccctgggacgtgctgctgcggacacagatgcgccttcctggtgagaga
gcctacagcccgcccgtggacgtgctgtgggacacggcccgcggctggacggccagctcc
ctgaggcagcgagtggccgacgtctactcacttcccgtggagaaaattgaaattgccaaa
tactttcctgaaaagtttgcatggcttccagtgtctagttggaaccagaaaactaccaaa
aggaaaaagaagaaaaagcaagataatttgcagggcgcaccttattacttgaaagatgga
gatactattggtgttaaggctagaaagatgtctgaaaacactgctcagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (12)   
   RefSeq(nuc) (8)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (30)   

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