KEGG   Carboxydothermus hydrogenoformans: CHY_1772
Entry
CHY_1772          CDS       T00287                                 
Symbol
polC
Name
(GenBank) DNA polymerase III, alpha subunit, Gram-positive type
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
chy  Carboxydothermus hydrogenoformans
Pathway
chy03030  DNA replication
chy03430  Mismatch repair
chy03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:chy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CHY_1772 (polC)
   03430 Mismatch repair
    CHY_1772 (polC)
   03440 Homologous recombination
    CHY_1772 (polC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:chy03032]
    CHY_1772 (polC)
   03400 DNA repair and recombination proteins [BR:chy03400]
    CHY_1772 (polC)
Enzymes [BR:chy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CHY_1772 (polC)
DNA replication proteins [BR:chy03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     CHY_1772 (polC)
DNA repair and recombination proteins [BR:chy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     CHY_1772 (polC)
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger DNA_pol3_a_NII HHH_6 tRNA_anti-codon Rv2179c-like DNA_pol3_a_NI HHH_3 RNase_H_2 tRNA_anti_2 POT1 DEDDh_C
Other DBs
NCBI-ProteinID: ABB15086
UniProt: Q3AB92
Position
complement(1583643..1587866)
AA seq 1407 aa
MDKIKSILESLGQKAFLDKVQVDPRNQKWELYFKAPHYISLKEFDGLKAAILEELPDLNV
SIDLAVENFRDTDIELLLEDINYLLVQKLPRLRGELREAGLTFDGENIIFETANEIVFDT
IKRKKVVETITKFLAKVAPDYKFIAKFKEEANEVLDWQLEMEEELVQKLWEEKVAEREGQ
ENKEEVPVKLSIGKEIKETPCKIANLTEEEKNVVVSGVIFDLEVKKLKTERILITFNLTD
QTDAISAKLFLKKGEEEKASLIKDGMYVKVRGEVQFDRFADELVLFINDLEEIEKPAGRM
DLAETKRIELHLHSKMSAMDSVVDLEKLFQTLKSWGHEAVAITDHGVVQAFPEAAELSAK
YGIKVIYGLEGYLVDDGLPVVFNPEPLSLKETPIVAFDFETSGLSSQRDEIIEIGAVKIF
DGEIKETFSVLIRPQKPISAKISELTGITNDLLEKEGLDFGEAIEKFLRFCDGSILLAHN
AAFDYGFLRQALKRLGHERKFSVVDNLALVRILFPELKNHKLKTITEHLEVSLNNHHRAL
ADSYALAEVFLKLLPRLFERGLYSLDDLAKINYNYINDRSKTYHVSILVKNQEGLYNLYR
LITLSHLKYFHRHPRIPKSELMRYREGLLIGTACEAGELFTALLENQPESRILEIARFYD
YFEIMPKGNNAFLLRNQRLKSEQELEELNRKIIALGEKLNKPVVATGDVHFLEPEDEIYR
RILQKGQGYDDAELQPPIYLKTTEEMLKEFAYLGQEKAYEVVVDNPRKIAEQIEEIKPIP
DEFYPPIIEGADRQIYEMTYQRAHELYGDPLPEIVEKRLKRELDAIINNGFAVLYLIAHK
LVKKSLDDGYLVGSRGSVGSSLVATMTMITEVNPLPPHYLCPNCRYSEFITDGSYGCGAD
MPDKNCPRCGTLLKKEGHDIPFETFMGFEGDKVPDIDLNFSGEYQPRAHKYTEELFGKDY
VFRAGTIATVADKTAFGFVKKYFEETGRPARQAWINWLTNGIVGVKRTTGQHPGGLMVVP
KNNDVHRFTPLQYPADDKSAGVVTTHFDYHSISSRLVKLDILGHDDPTVLKMLEDLTGID
PRTIRLDDRKTLGIFSSTEPLGVTPEQIRTTVGTYGIPEFGTRFVRQMLEDTRPKSFTEL
VRISGFSHGTDVWLNNAQDLIRAGICKLSDAISTRDDIMIYLLQKGVPPKKAFKIMENVR
KGKGISEEEIAVMKEHGVPDWFIGSCQKIKYLFPKAHAVAYVMMAFRIAYFKVYYPEAFY
ATYFTVRADDFDLPVILAGPEKIWKTLDELEQRGGNLTAKEKGLVTVLEVALEMLARGIK
MLPVDLEKSDATRFLITPEGILPPFVALPGIGEAAAINIVKAREEGMFVSIEDLKTRGKA
TKAVIEVLDAHGCLKGLAPTSQLVLFA
NT seq 4224 nt   +upstreamnt  +downstreamnt
atggacaaaattaagtctatcctggaaagcttggggcaaaaagcgtttttggataaagtt
caggtggacccccgaaatcaaaaatgggagctttattttaaagctccccattatatttct
ttaaaagaatttgatggcttaaaggcagcaatcttggaagaacttccggatttaaacgta
agtattgatttagcggtggagaattttcgcgatacggacatcgagcttctcttagaagat
attaactatttactggtgcaaaaattaccgcgtttacggggtgaactcagggaagcgggt
ttaacctttgatggtgaaaacattatttttgaaaccgccaatgaaatagtgtttgatact
attaaacggaaaaaagttgtggaaacaattacgaaatttctggctaaagtcgctccggat
tataagtttattgctaaatttaaagaagaagcaaatgaagtactggactggcagttagaa
atggaagaagaattggtgcaaaagctttgggaagaaaaagtggcggaaagagaagggcag
gaaaataaagaggaggttccggttaaactttccataggaaaggaaattaaggaaactccc
tgtaaaattgccaacctcaccgaagaggaaaaaaatgtggtggtcagtggagttatcttt
gatttggaagtgaaaaagcttaagacggaaaggatattaattacttttaacctaacggac
caaacggatgccatttcggccaaactgtttttgaaaaaaggggaggaagaaaaagcttct
ttaatcaaagatggcatgtacgtaaaggtcaggggcgaagtgcagtttgaccgttttgcc
gatgaactggtgttatttataaatgatttagaggaaatagaaaaacctgcgggccggatg
gatttggctgaaaccaagagaattgaactccatttacacagtaagatgagcgcaatggat
agcgtagtggatttagaaaagcttttccaaactttgaagagctgggggcatgaggcggta
gctattaccgaccacggtgttgttcaggcttttcctgaagcagcggaactttcggcaaaa
tacgggattaaagttatctacggacttgaagggtatctggtggatgatggactgccggta
gtttttaatcccgaacctttatcgttaaaggaaacaccaatagtagcttttgactttgaa
acctccggtctatcttcgcaaagagatgaaattattgaaattggagcggttaaaatcttt
gacggagagataaaggagactttttccgtactgattcgcccgcaaaaacctatttctgct
aaaatttccgaacttaccggtattactaacgaccttttagaaaaggaagggctggatttt
ggtgaggccatagaaaaattcctgcgtttttgcgatggcagcatcctgctggcccataat
gctgcttttgattacgggtttttacgacaagctttaaagagattgggacatgaacgaaaa
ttttcggtggtggataatttggctctggtcaggattctgtttccggagttgaaaaatcac
aagttaaaaaccataaccgaacacctggaagtttcccttaataaccaccaccgggctctt
gcggacagctatgctttagcggaagtctttttaaagctactgcccaggctttttgaacgg
ggactttatagcttggatgacctggccaaaataaactacaactacattaacgaccggtct
aaaacctatcacgtttcgattttagtgaaaaatcaggaaggactttacaatctttaccgt
ttaataaccttatcccatttaaaatatttccaccgccacccccgcatccccaaaagtgag
ctgatgcgctaccgggaaggcttactgataggtactgcctgcgaggcaggggagcttttt
accgctttactggaaaatcagccggagagccgtattttagaaattgcccggttttacgat
tattttgaaataatgcctaaaggaaataatgcctttttattgagaaaccagcgtttaaag
agcgaacaggaattggaagagttgaaccggaaaatcattgctttgggagaaaaattaaat
aaaccggtggtggctaccggcgatgttcattttttagagccggaagatgaaatttaccgc
cggattctccaaaaagggcaggggtatgacgatgccgaactgcagccgcccatttacctt
aaaactaccgaagaaatgttaaaagaatttgcttatttaggccaggaaaaagcctatgaa
gtggtagtggacaacccgcgcaaaattgccgaacaaattgaagagattaaaccaattccc
gatgagttttacccgccgataattgaaggggcggaccggcagatttacgaaatgacttac
cagagagctcatgagttatacggagatccgcttccggaaatagtggaaaaaagattaaag
cgggagcttgatgctattattaataacgggtttgccgtattgtatttaatagcccataag
ttggtaaaaaaatctttggatgatggttatcttgtaggttcgcggggttcggtaggttcc
tcgctggttgcaacgatgacgatgattaccgaggttaaccctctacccccccattacctt
tgtcctaattgtcgctacagcgagtttattaccgatggcagttacggctgcggtgccgat
atgcccgacaaaaattgtccgcgctgtggtactcttctcaaaaaagagggtcatgatatt
ccctttgaaacctttatgggttttgaaggggacaaagttccggatattgatttaaacttt
tccggggaataccagcctcgagctcacaagtataccgaagaactatttggcaaggattac
gttttccgggcgggaactattgctaccgttgccgataagacagcctttggttttgttaaa
aaatattttgaggagaccggaaggccggcccgtcaggcctggataaactggctaacgaac
gggattgtcggagtcaagagaaccaccggtcaacatccgggcggtcttatggttgtcccg
aaaaataacgatgttcaccggtttactcctctccagtatccggcggatgataaaagtgcg
ggagtggttaccactcattttgattatcattcaatttcgagccgtttggttaagcttgac
atcctgggccacgacgacccgaccgttcttaagatgttggaagatttaacgggaattgat
ccccgaactatccggttagatgaccggaaaactttaggtatcttttcttccaccgaaccc
ttaggggtaactcccgaacaaatccgcactactgtaggtacctacggaattccggaattt
ggaacccgttttgtgcggcagatgcttgaagatacccgacccaagagctttaccgaactg
gtgcggatttccggcttttcccatggaacggacgtgtggctgaataatgctcaggattta
attcgagccggaatatgtaaattatccgatgcaatttctacccgggacgacattatgatt
tacctcctgcaaaaaggggttcctcccaaaaaagcttttaaaatcatggaaaatgtccgc
aaaggaaaaggaatttccgaggaagaaatagcggtaatgaaagaacatggagttcccgac
tggtttattggaagctgccagaaaataaaataccttttccccaaagcccatgcggtagct
tacgtgatgatggcttttagaattgcctactttaaggtttactacccggaagctttttat
gctacgtattttaccgtaagggctgatgattttgacctgcccgttattttggctggtcca
gaaaaaatttggaaaactcttgatgagctggaacaacgggggggaaatttaacggcaaag
gaaaaaggtctcgttacggtgttagaagttgccctggaaatgctggcccggggaataaaa
atgctgccggtagacctggaaaaatccgatgcaacccgctttttaataaccccggagggt
atcttgcctccttttgtggctttacccggaataggggaagcagcggcgataaatattgta
aaggcccgggaggaaggaatgtttgtatccattgaagatttaaaaacccggggaaaagcc
actaaagcggtaattgaagttttggatgcccacggctgcttaaaaggcttagcaccgact
tcccagttagtactttttgcttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (107)   
   KEGG ORTHOLOGY (1)   
   RefGene (104)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (131)   

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