KEGG   Clostridium isatidis: BEN51_05175
Entry
BEN51_05175       CDS       T05663                                 
Name
(GenBank) helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
cia  Clostridium isatidis
Pathway
cia03420  Nucleotide excision repair
cia03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cia00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BEN51_05175
   03430 Mismatch repair
    BEN51_05175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cia03400]
    BEN51_05175
Enzymes [BR:cia01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BEN51_05175
DNA repair and recombination proteins [BR:cia03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BEN51_05175
   MMR (mismatch excision repair)
    Other MMR factors
     BEN51_05175
SSDB
Motif
Pfam: UvrD-helicase AAA_19 PhoH DEAD SLFN-g3_helicase Viral_helicase1 UvrD_C_2 ResIII AAA_14 AAA_30 T2SSE AAA_16 Glyco_transf_21 AAA_11 NACHT
Other DBs
NCBI-ProteinID: ASW42881
UniProt: A0A343JBH3
Position
complement(1102825..1105053)
AA seq 742 aa
MNNNSEWFAEKEWLQKVLTEVRKQLNEKRNYKERFKKEYIETHKEMWDNIGSVAINNGLD
QVVDFMQFINSTKMQKRNHEFTRQMEEKYEQMLLSPYFGRMDFIEHDNDKAEKFYIGISN
LINEEFDFLVYDWRAPVSSMFYEYEIGEGKYKSPEGIINGKIILKRQYKINNGKIEYMFD
SDINIEDDVLQEILAKSTDNKMKSIVTSIQREQNQVIRNEEYKNLIVQGPAGSGKTSVAL
HRIAYLLYKYREKINSRNIVIFSPNDIFNEYISNVLPQLGEENMYQTTFKEFMNKALGDE
FKKEDYCNMMEYIFSYKDLNIYETRIINIRFKSSLEFINILKEYVSYLEKKNRDFKDIIV
NDKMIISSKEIEELFNKDYNNMPIKRRLDKIKNRIIFLLEAYEKELIEEAANVLETSDYY
TSEKEIKKQSRAIAKDQMLEAYNEIDRITKFDLLDIYKELFEKFKNFYKGPNIEEIKFYT
LNKLKNKELNYEDQIALLYLKVAMGDVSGTSEIKYIIIDEAQDYTPLQYEILTNIFKSAN
MTILGDLQQSINPYMNLGCYNNIDHIFQKDKTCLINLTKSYRSTMEITKFARKILNKEIN
DEYVERSGEKPFIINLSREEDIKEKLIEDIKVFKEKGFKSIGIITKNIKEAKKVFDYLKD
KIQVKAIMKDDDEYISGTLIIPAYLAKGLEFDVALIYNAGETVYSCEEERLLLYTACTRA
LHVLGIYYSGEISPLLKEAIKI
NT seq 2229 nt   +upstreamnt  +downstreamnt
ttgaataataattctgaatggtttgctgaaaaggagtggcttcaaaaagtccttactgaa
gttagaaaacagctaaatgaaaagcgcaattataaagagcgttttaaaaaggaatatata
gaaactcataaagaaatgtgggataatatcggttcagttgccataaataatggattagat
caagttgtagattttatgcaatttatcaattcaactaaaatgcaaaaaagaaatcatgaa
tttacaagacaaatggaagaaaaatatgaacaaatgctattatcaccttattttgggaga
atggattttattgagcatgacaatgataaagctgaaaagttttatataggaatttctaat
cttattaatgaggaatttgattttttagtatatgattggagagcaccggtttcaagcatg
ttttatgaatatgaaattggagaaggaaaatataaatcccctgaaggaataattaatgga
aagataatcttaaagaggcaatataaaattaataatgggaaaattgaatacatgtttgat
agtgatattaatatagaagatgatgtgttacaagagattttagctaagagcacagataat
aaaatgaaatcaatagtaacatctattcaaagagagcaaaatcaagtaattcgtaatgaa
gaatacaagaatcttattgttcaaggtcctgctggaagtgggaaaacatctgtagcttta
catagaatagcttatctcttatataaatatagagaaaaaataaattcacgaaatatagta
atattttctcctaatgatatttttaatgaatatatttctaatgtattgccacagcttggg
gaagaaaatatgtatcaaactacttttaaggagtttatgaataaagctttaggagatgaa
tttaaaaaagaagattactgtaatatgatggagtatatttttagttataaagatttaaat
atttatgagacaagaattataaatattagatttaaatcttctttggaatttattaatata
ttaaaagaatatgtttcttatctagaaaaaaagaatagagattttaaggatataattgta
aatgataagatgataatatcttccaaagaaatagaagaattgtttaataaggactataat
aatatgcctataaagagaaggctggataaaataaagaataggataatatttcttttggag
gcttatgaaaaagaactaatagaagaagcggctaatgtacttgaaacttctgattattat
acaagtgaaaaagaaattaagaaacaaagtagagctattgctaaagatcaaatgttagag
gcatataatgagatagatagaataacaaaattcgatttattagatatttataaagagctt
tttgaaaaatttaagaatttttataagggaccaaatattgaagaaattaaattctataca
cttaataaattaaaaaataaagaattgaattatgaggatcaaattgctttactttattta
aaggttgcaatgggagatgtttctggaacttctgaaataaaatatataattattgatgaa
gctcaggattatacacctttacaatatgaaatattaaccaatatttttaaatctgccaat
atgactattcttggagatttacaacaatcaataaatccttatatgaatttaggttgttat
aataatattgaccatatttttcaaaaggataaaacttgcttgataaatttaactaaaagt
tataggtctacaatggaaattacaaagtttgcaagaaaaattttaaataaagaaattaat
gatgaatatgtagaaagaagtggggaaaaaccttttattataaatctctcaagagaagaa
gatataaaagaaaaattaattgaggatataaaggtgtttaaagaaaagggatttaaatca
ataggtattataacaaaaaacattaaagaagcaaagaaagtttttgattatctaaaagat
aaaattcaggtaaaagctataatgaaggatgatgatgaatatattagtggtaccttaata
atccctgcctatctagcaaagggattagaatttgatgtagcacttatatataatgcagga
gaaacagtttatagctgcgaagaagaaaggcttcttctttatacagcttgcacaagagca
ctccatgttttaggaatatattattcaggtgaaatttcaccattattaaaggaagctatt
aaaatatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (25)   

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