KEGG   Clostridium isatidis: BEN51_06185
Entry
BEN51_06185       CDS       T05663                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K02405  RNA polymerase sigma factor FliA
Organism
cia  Clostridium isatidis
Pathway
cia02020  Two-component system
cia02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:cia00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BEN51_06185
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    BEN51_06185
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cia03021]
    BEN51_06185
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:cia02035]
    BEN51_06185
Transcription machinery [BR:cia03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BEN51_06185
Bacterial motility proteins [BR:cia02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    BEN51_06185
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r3 Sigma70_r4_2 UPF0122 DUF1492 HTH_23 Sigma70_ECF MarR_2 Creatinase_N_2 MarR HTH_37
Other DBs
NCBI-ProteinID: ASW43080
UniProt: A0A343JC22
Position
complement(1307912..1308637)
AA seq 241 aa
MEAQSPLIQKEQIVEKYIPLVKYLASRVSFGKTKYLEYEDLVGYGIIGLLDAINRYDPSK
GMKFSSYATLRIKGAMIDEIRKNRPISKGAMDKLVKYNEAIEKLQNTLMREPSLEEIACD
MNLTIEDVSHIENYINYMSVTSLEAIIYSDDDDLTIMETLEDKDTISPEESLENKERVEI
LEKAINQLKEKDKLVLNLYYHEKLTLKEIGEVLEVSESRVSQLHSRAIRNLRAIMQKINY
I
NT seq 726 nt   +upstreamnt  +downstreamnt
atggaagctcaaagtccattaattcaaaaagaacagatagttgaaaaatatataccatta
gttaaatatttagcttcaagagttagttttggaaaaaccaaatatttagaatatgaagat
ttagttggatatggaattattggacttttagatgcaattaatagatatgatcctagtaaa
ggtatgaagttttcatcttatgcaactttaagaataaaaggagcaatgatagatgaaata
agaaaaaatagaccaatttctaaaggtgcaatggataaattagttaaatataacgaagct
atagagaaactacaaaatactttgatgagagaacctagtcttgaggaaatagcttgtgat
atgaatttaactattgaagatgtttcacatattgaaaattatatcaactatatgtcagtg
acatccttagaagctataatttattctgatgatgatgatttaacaataatggaaacatta
gaagataaagatacaatatcaccagaagagtccttagaaaacaaggaaagggtagaaatt
ttagagaaggcaataaatcaattaaaagaaaaagataaattggtattaaatttatattat
catgaaaaactaactcttaaggaaattggagaagtattagaagtatcagaatctagagtt
agtcagttacatagcagggctattagaaatctaagagctataatgcagaaaataaattat
atttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (21)   

Download RDF
DBGET integrated database retrieval system