KEGG   Citrus x clementina (clementine): CICLE_v10001597mg
Entry
CICLE_v10001597mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K10756  replication factor C subunit 3/5
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03030  DNA replication
cic03410  Base excision repair
cic03420  Nucleotide excision repair
cic03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CICLE_v10001597mg
   03410 Base excision repair
    CICLE_v10001597mg
   03420 Nucleotide excision repair
    CICLE_v10001597mg
   03430 Mismatch repair
    CICLE_v10001597mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cic03032]
    CICLE_v10001597mg
   03036 Chromosome and associated proteins [BR:cic03036]
    CICLE_v10001597mg
   03400 DNA repair and recombination proteins [BR:cic03400]
    CICLE_v10001597mg
DNA replication proteins [BR:cic03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    CICLE_v10001597mg
  DNA Replication Termination Factors
   ELG1-RFC complex
    CICLE_v10001597mg
Chromosome and associated proteins [BR:cic03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    CICLE_v10001597mg
DNA repair and recombination proteins [BR:cic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     CICLE_v10001597mg
  Check point factors
   HRAD17(Rad24)-RFC complex
    CICLE_v10001597mg
SSDB
Motif
Pfam: AAA DNA_pol3_delta2 Rad17 AAA_22 AAA_assoc_2 AAA_16 AAA_11 ATPase_2 AAA_14 AAA_5 AAA_24 DUF815 AAA_30 RuvB_N AAA_7 ResIII bpMoxR AAA_19 AAA_3 AAA_18 AAA_35 nSTAND3 DNA_pol3_delta SLFN-g3_helicase MCM TniB AAA_28 TIP49 Mg_chelatase RNA_helicase AAA_2 AAA_25
Other DBs
NCBI-GeneID: 18040255
NCBI-ProteinID: XP_006434235
UniProt: V4SID9
Position
Unknown
AA seq 305 aa
MAEAETVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRD
IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV
VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ
VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL
NILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVL
FVLLL
NT seq 918 nt   +upstreamnt  +downstreamnt
atggcggaagcggaaacggtgtcgcttatggacttcgacgaagacgagaaccagaacttg
aaaccaaaagacaacgggaaaaacgtcatcgtttcaggcacgccacccgacattaaagcc
tctccttgggtcgaaaagtaccgacctcagtccctcgctgacgtggccgctcatcgcgac
attgttgataccattgataggttgactagcgagaacagactgccccatcttctgctgtat
ggtcctcccggcacaggcaaaacatctaccattcttgctgttgcacggaagctttatgga
gcacaatatcacaatatgattctggagctgaatgcgtctgatgatagaggaattgacgtt
gtgcggcaacagatccaagattttgctagcactcaaagcttctcatttggtgtaaaggca
tcagtcaagctggtcttgcttgatgaggctgatgccatgacaaaggatgctcagtttgcc
ttgcgtagagtgattgagaaatacacgaagaacactaggtttgcgcttatctgtaatcag
gtcaacaagattattccagcactgcagtctagatgtaccagattccgatttgctcctctt
gaacctgttcatgtgactgagcgtctcaaacatgtaatagaggctgaaggccttgatgta
accgagggtggcttggcagcgcttgtacggctttgcaatggtgatatgagaaaggccttg
aacattttgcagtcaacacatatggcgtctcagcaaattacagaagaagctgtatacttg
tgcactggaaaccctttgcccaaggacattgagcaaatatcttactggcttctgaacgaa
tcatttgcggatagtttcaagcgtattcaaaatctttcgtttattatccgattggtgtta
tttgttttgctgctgtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (32)   
   Pfam (32)   
All databases (48)   

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