KEGG   Citrus x clementina (clementine): CICLE_v10007261mg
Entry
CICLE_v10007261mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CICLE_v10007261mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cic03019]
    CICLE_v10007261mg
Messenger RNA biogenesis [BR:cic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CICLE_v10007261mg
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     CICLE_v10007261mg
SSDB
Motif
Pfam: EDC4_C Ge1_WD40 WD40 Sey1_3HB
Other DBs
NCBI-GeneID: 18054725
NCBI-ProteinID: XP_006452721
UniProt: V4UTP6
Position
Unknown
AA seq 1293 aa
MRNWFPPYPPPSSSSAAGDNFFPYPPPPPPPPPEPHANIYPHPYPHGPHRLLPYTPPPTT
TVVSPNAGPQILALLNNNKSKHVGSTAPIYGKRVFGDYVAYDVDAVEEGREPTQQLEVNP
ITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNTATRSLLRGHTKRVSDMAFYAD
DVHLLASVSVDGRVYVWKICEGPDEQDKLQITGNAIIAIHLLRGEGEGDYVHPRVCWHCS
RQDVLIVGIGKYVLRIDSAKVSMGEGFSAEAPLQCSVDGLIDGVQLVGRHDGEVTDLSMC
QSTTTRLVSASTDGLIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGP
LNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLF
ANAKKNAIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTIDPPSEHIIKLYCVQTQA
IQQYSLNFFLCLPPPAESGGLERPDSSVSNDANGSRLSEFLFPSSTSKPSFSETTGAVRY
PQLSTSHEATTSQENLTSKTESKPLSLARTTSDTNVVCVASPPLPLSPSFSRKHSGSINL
PNSSELGSLLNEPGGSQPIIDSSFDGKTDTTHVLSHVPSLDSDANNDKINIAPNDISRAL
NPSMFKHPTHLITPSEILMSASSSETTNIIGGKNEEEVVVNSDAGNAEVEVKVLDETRLT
HDEFGSRGESQNLVSENREKYLRYQATDPRIGMAAKCAGTSAETCVAEEAQEVDGAGIME
TLAQPPCNDEAEVEDSTQDLDGGVSDSTMTTTFAQTGASSAKGKKQKEKKYQASSQCSPS
STVLNLANLSNEPAGSSSLPSAPAAFSQVIAMQDMLNQLMTMQKELQKQMSNLVTLPVTK
EGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTA
SLEKLVKKELAAVGPAIVRTISPSIEKTITSAIVESFQRGVGDKAVNQLERSVNSRLEAT
VGRQIQAQFQTSGKHALQDALKSSVEASVIPAFEKSCKAMFEQVDATFQKGMVEHTTATL
QHFESTHSPLALVLRESVNSVSSMAQTLSGEFVDGQRKLFDLAGVRNNTSAFNPSVPLSN
GPLLGLHEKVEATMDPTKELSRLVSDRKYEEAFTTALQRSDVSIVSWLCSQVDMHGLLSM
VPLPLSQGVLLSLLQQLACDINKDTARKLAWLTDVATAINPADPMIAVHARPIFEQVYQR
LHHQRSSPTISGAELSSIRLLIHVINSMLMTFK
NT seq 3882 nt   +upstreamnt  +downstreamnt
atgcgtaattggttccctccgtatccccctccgtcctcctcctccgccgccggcgacaac
ttcttcccgtacccaccaccgccaccgccacctcctccagagcctcacgctaacatttac
ccccacccttacccccatgggccccatcgcctactcccttacactccaccgcccaccact
accgttgtttcccccaacgccggcccccaaattctcgctctcctcaacaacaacaaaagc
aagcatgtggggtccacggcgccgatttacgggaagcgggttttcggcgattacgtggct
tatgacgtggacgcggtggaagaagggagagaaccgacgcagcaactggaagtgaatccg
attaccaaatacggttcggatcctgagcttcttattggcaggcagattgctgttaataag
cattacgtttgctatggacttaaaggcggtaatgttagggttttgaatctcaacaccgct
actcgctccttgcttcgcggccacactaagagagtgtcagacatggctttctatgcggat
gatgttcacctgttggctagtgtgagtgtggatgggcgggtttatgtgtggaagatatgt
gaaggtccagacgaacaagataagctgcaaattactggaaatgctattattgctattcat
cttttgagaggagaaggagagggagactatgtgcacccacgagtttgttggcattgtagt
agacaagatgttttgattgtgggaattggaaaatatgttttaagaattgattctgctaaa
gttagcatgggtgaaggattttcagctgaggcacctctccaatgttctgttgatgggttg
attgatggggttcagttagttggtagacatgatggagaagtcactgatttgtccatgtgt
caatcgacaaccacccgtttggtttctgcatctactgatggcctgataaagatttgggaa
gatagcaaggtggcgccacttattatattgaaaccgcatggtggccaacctgtgaattca
gctcagtacttgacagctcccaaccaggcgggtcatatcattcttgttacagcgggacct
ttaaaccgggaggtgaaactttgggcctcagcaagtgaagaaggatggtcgcttcctact
catgctgaatcatggaagtgtactcagacattggatttgaagagttcagctaaacctcga
gttgaggaggctttctttaaccaagtcgtggtgttgtctcaagctggccttctcttattt
gcaaatgctaagaagaatgcaatatactctgtccatttaggttatggtaataattctgca
gcaacccgcattgattacatagcagagtttacagtgaccatgcctgttttgagttttact
gggacaattgatcctcctagtgagcatattattaagctctattgcgtgcagacacaggct
attcagcagtattctctgaactttttcctgtgccttccacctccagcagagagtgggggc
ttggagaggccagattccagtgtttcaaatgatgcaaatggaagtagacttagtgagttt
ctttttcctagttctacatccaaaccaagtttctctgagacgactggggctgtgaggtat
ccccaactgtctacgtctcatgaggctaccacttcgcaagaaaacctgacatctaaaacg
gaatctaaacctctctctcttgcacggacaactagtgatactaatgttgtttgtgtcgca
tcaccgcctcttccgctgagtccaagtttttctaggaaacattctggttctataaatcta
ccaaatagctctgagctaggctccttactcaatgaacctggaggaagccagccaattatt
gactcttcatttgacggtaaaacagacaccactcatgtgttatctcatgtgccttccttg
gatagtgatgcaaataacgacaagataaacattgcgcctaatgatatatctagggcactc
aatccttctatgttcaaacatccaactcatctgataacgccttcagagatcctaatgtct
gcttcatcttctgaaacaactaatattattggaggcaagaatgaggaagaggtggttgtc
aatagtgatgcaggcaatgctgaggtggaggttaaagtattggatgaaacaagacttact
cacgatgaatttggttcccggggagaatctcaaaaccttgtttcagaaaatagggaaaaa
tacttacgctaccaggctacggatcctaggattgggatggcggcaaaatgtgctggaaca
tcagcagaaacttgtgttgcagaggaagctcaggaagttgatggtgctggcataatggag
acacttgcacaaccaccttgtaatgatgaggcagaagtcgaggactctacacaagatttg
gatggaggtgtttcagactcaactatgaccaccacatttgcacaaacaggcgcatcaagt
gcaaaggggaaaaagcagaaggagaaaaaatatcaagcatcaagtcaatgttctccatcg
tcaactgttttgaacttggccaatttgtccaatgaacctgctgggagttcaagtctcccc
tctgcaccagctgctttttctcaagttattgccatgcaggatatgcttaatcagctaatg
accatgcaaaaggaattgcagaagcagatgtcaaacttagttaccctccctgttaccaaa
gaaggtagaagactggaggcatctttagggcggggtattgagaaagctgtgaaagccagt
actgatgccttgtgggctcgttttcatgaggagaatgcaagaaatgagaaattgttgcga
gaccgcacacagcagataacaggtttgatcactaacctaatcaacaaggacttgacagcc
tcattagagaaactggtgaagaaggagctggctgcagttgggcccgctattgtccgcaca
atttctccaagtatcgagaaaactataacttcagctattgtagagtccttccagagagga
gtaggtgacaaggcagtgaatcagctggagaggtctgttaattcaagacttgaagctact
gttggtaggcaaatccaagcacaatttcaaacttctggcaagcatgctctccaggatgct
ctgaagtctagtgtagaagcttcagtgatccctgcctttgagaagtcatgcaaagctatg
tttgagcaagttgatgctacatttcagaaaggaatggttgaacatacaactgctactctg
cagcattttgagtccacacattctccactggcacttgttttaagggaatctgtcaattct
gtgtcatcaatggctcaaaccttaagtggagaatttgtcgatggtcagcgaaaactgttc
gatcttgctggtgtaagaaataacacaagtgctttcaatccttcagttccactgagcaat
ggacctttgcttggtctacatgagaaggttgaggcaactatggatccaacaaaagagctc
tcaagattggtatctgatcggaaatatgaggaagctttcactactgccctgcaaagaagt
gatgtgtctatagtgtcttggttatgttcacaggttgatatgcacgggcttctgtccatg
gttcctctccctttgagccaaggagtattactctcgcttctgcaacaattggcttgtgac
attaacaaggacacagcccggaaacttgcgtggctaacagatgtggccactgcaataaat
ccagcagaccccatgattgcggtgcatgcccggcccatctttgagcaagtttatcagaga
ctgcaccatcaacggagctcaccaacaatcagtggtgccgaactttcaagtatccgtctt
ctcatacatgtcatcaactccatgctgatgacgttcaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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