KEGG   Citrus x clementina (clementine): CICLE_v10008383mg
Entry
CICLE_v10008383mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:3.6.4.13]
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03013  Nucleocytoplasmic transport
cic03015  mRNA surveillance pathway
cic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CICLE_v10008383mg
  09122 Translation
   03013 Nucleocytoplasmic transport
    CICLE_v10008383mg
   03015 mRNA surveillance pathway
    CICLE_v10008383mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cic03019]
    CICLE_v10008383mg
   03041 Spliceosome [BR:cic03041]
    CICLE_v10008383mg
Messenger RNA biogenesis [BR:cic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CICLE_v10008383mg
Spliceosome [BR:cic03041]
 Complex C
  Other components
   EJC/TREX
    CICLE_v10008383mg
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CICLE_v10008383mg
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 YihI
Other DBs
NCBI-GeneID: 18054679
NCBI-ProteinID: XP_006450446
UniProt: V4UMU7
Position
Unknown
AA seq 423 aa
MGETRDNEYEDELLDYEEEDAQAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL
CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILAL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGSFQCLVL
GSF
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgggagagacaagagacaacgagtacgaggatgagcttctcgactacgaggaagaagat
gctcaagctcccgattccgtcgctaccaaagcaaacggcgaagccgccaagaagggctat
gttggtatacacagttcaggattcagagactttcttttgaagccggaacttcttcgtgca
attgtggactcaggatttgagcatccttcagaagtgcaacatgaatgcatacctcaagcg
attctgggcatggatgttatttgccaagctaaatcagggatggggaagactgctgtgttt
gttctgtcaactcttcagcaaacagagccaaatccaggccaagttactgcacttgtttta
tgtcacactagagagttagcttatcagatctgccatgagtttgagaggttcagtacttac
ctgcctgatatcaaggttgctgtcttttatggtggagttaatataaaaattcacaaagat
ttgctgaaaaacgaatgtccccaaattgttgttgggactcctggaaggatactagctctt
gctagagataaagacctctctttgaagaatgtgaggcattttatccttgatgaatgcgat
aagatgctggaatctcttgacatgagaagagatgtgcaagagattttcaagatgactcct
catgacaagcaagtaatgatgttttcagcaacactcagcaaggaaatccgcccagtctgc
aagaaatttatgcaagatccaatggaaatttatgtggatgacgaggcaaagttgactctt
catggtcttgtacagcactacatcaaattgagtgagctggagaaaaatcggaagttgaat
gatctccttgatgcattggactttaatcaagttgttatctttgtcaaaagtgttagccga
gcagcggagttaaacaagttacttgtagaatgcaattttccttctatatgcatccattct
ggcatgtcccaagaagaaaggttgacgcgttacaaaggtttcaaggaggggaacaagagg
attcttgtggccacagatttggttggtaggggaattgacattgagcgtgtcaacattgtc
atcaattatgacatgccagattctgctgatacttatctgcacagggttggtagagctggt
aggtttggcaccaagggccttgcaattacttttgtatcatctgcttcagactccgatatt
ctcaatcaggtttcaaaattcatgttcttattgattggttcttttcaatgtttggttttg
ggcagtttttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

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