KEGG   Citrus x clementina (clementine): CICLE_v10014076mg
Entry
CICLE_v10014076mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K12879  THO complex subunit 2
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03013  Nucleocytoplasmic transport
cic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CICLE_v10014076mg
  09122 Translation
   03013 Nucleocytoplasmic transport
    CICLE_v10014076mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cic03019]
    CICLE_v10014076mg
   03041 Spliceosome [BR:cic03041]
    CICLE_v10014076mg
Messenger RNA biogenesis [BR:cic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     CICLE_v10014076mg
Spliceosome [BR:cic03041]
 Complex C
  Other components
   EJC/TREX
    CICLE_v10014076mg
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CICLE_v10014076mg
SSDB
Motif
Pfam: Tho2
Other DBs
NCBI-GeneID: 18052089
NCBI-ProteinID: XP_006448121
UniProt: V4UGC9
Position
Unknown
AA seq 1193 aa
MELRGLFQYLVNQLKRGKGIELVLLQELIQQMANVQYTENLTEDQLDAMAGSETLRYQAT
SFGVTRNNKALIKSTNRLKDSLLPRDEPKLAIPLLLLIAQHRSVVVINADAPYIKMVCEE
FDRCHGTLLQYVEFLCSAVTPATAYAQLIPSLNDLVHQYHLDPEVAFLIFRPVMRLFKCQ
GSSAVFWPLDDGDAANNTTINSESEPSEDIGNVILDLGSQKPVMWSDLLDTVKTMLPSKA
WNSLSPDLYTTFWGLTLYDLYVPRDRYESEIAKQHAALKALEELSDNSSSAITKRKKDKE
RIQESLDRLTNELHKHEENVASVRRRLSREKDRWLSSCPDTLKINMEFLQRCIFPRCTFS
MPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGKFLFETLK
IAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLES
AEYMEIRNALILLTKISGVFPVTRKSGINLEKRVAKIKNDEREDLKVLATGVAAALANRK
SFWVTDEEFGMGYLELKPAPSLASKSLSGNVVAVQGSAINVSQSEPGTGNSVKDHISRAK
PGDGRLERTESISHVKSDNVKLKGSSLTNGSDIHSSMPSTAVQAEMSRVVENQKQVDEDE
NMAKVAMKNSAESESKASVKRSVPSASLTKAPKQDLAKDDNKSAKAVGRTSGSSANDRDF
SSHAAEGKQGGATTVSSAAAVTANLVSAKGSSSSSRASDMHGNESKTDGGVAKSSEVRLS
TGKSDGNEVSDAPKSSSSRTMHSPRHDSSVAASKSGDRLQKRTSPSEDPDRPSKRYKGDT
ELRDSDGEVRVPDRERSADPRFADLDKIGTDEQSMYRTTDRSKDKGNERYERDHRERLDR
LDKSRVDDIIPEKQRDRSMERYGRERSVERGQERGADRAFDRLAEKAKDDRNKDDRSKLR
YNDSSSEKSHVDERFHGQSLPPPPPLPPHIVPQSVNAGRRDEDADKRFGSTRHSQRLSPR
HDEKERRRSEENSLVSQDDAKRRREDDFRDRKREDREGLSLKMDERERERDRDRDREKAN
LLKEEMDANAAASKRRKLKREHLPSGEAGEYSPVAPPYPPLAIGISQSYDGRDRGDRKGA
AMQRTGYMEEQSMRIHGKEVATKMARRDSELIYEREWEDEKRQRAEQKRRHRK
NT seq 3582 nt   +upstreamnt  +downstreamnt
atggaattaaggggtcttttccagtatctggtgaaccagttaaaaagggggaaggggatt
gagctagttctcctacaggaacttattcaacaaatggcgaatgtccaatacactgagaac
ctgacggaggaccagttggatgccatggcaggaagtgagacactccggtatcaggctaca
tcatttggagtaaccaggaataacaaggctctgatcaaatccaccaataggttaaaagac
tcattgcttccaagggatgaaccaaagttggcaattccccttttgttgcttatagctcag
catcgttctgtggttgttataaatgcagatgcaccttacataaaaatggtttgtgaggag
tttgatagatgccatggaactcttcttcagtacgtggaattcctttgtagtgctgtaact
ccagctactgcttatgctcaactgattccatctcttaatgatcttgtccaccagtaccac
ctggatcctgaggtagcctttttgatatttcgccctgtaatgaggctctttaagtgtcag
gggagttctgctgttttctggcctttagatgacggtgatgctgcaaataacacaactata
aattcagagtctgaaccttcagaagatattggcaatgtgattctggatcttgggtctcag
aagcctgtaatgtggtcagatctccttgacactgttaaaactatgttgccctcaaaagcc
tggaacagcctctcccccgatctctatacgactttctgggggctcacactctatgatcta
tatgttcccagagaccgatatgaatctgaaatcgccaaacagcatgccgcacttaaagct
ctggaagagctttcagacaattcgagttcagcaattactaaaaggaaaaaagacaaggaa
agaattcaagagtctttagatcgtctgactaatgaacttcataagcatgaagaaaatgtt
gcatcagttcgtcggcgactttctcgtgaaaaggacagatggttgagttcctgccctgat
actctgaagatcaatatggagttccttcagcgttgcatttttcctcgctgcactttcagc
atgccagatgctgtctattgtgccatgtttgttcatactcttcattcccttggcacacca
tttttcaacacagtaaaccacattgatgttctgatttgtaaaaccttacaacctatgata
tgctgctgcactgaatatgaagcaggcagactagggaagtttttgtttgagacattaaag
attgcttaccattggaagagtgatgaatctatatatgaacgtgaatgtggaaacatgcct
gggtttgctgtatattatagatatcccaacagccaacgagtcacatatggccagttcatt
aaggttcactggaaatggagccaaagaatcacgcgtttattgattcagtgcttggaatca
gctgagtatatggaaattaggaatgctcttatattgttgacaaaaatatctggtgtcttc
ccagttactcgaaagagtgggatcaatcttgaaaagcgggtagctaaaataaaaaatgat
gagagggaggatctcaaggttttggcaactggtgttgctgctgctttggctaatagaaaa
tctttctgggttactgatgaagaatttggcatgggatatcttgaactgaaaccagctcca
tcacttgcttcgaagtctttgtctggtaatgtagtagcggtgcaaggttctgctattaat
gtttctcaaagtgaacctggcacggggaattcagtaaaagaccatatttcaagagcaaaa
cctggtgatgggaggttggaaagaacagaaagcatctcacatgtaaaaagtgataacgta
aaattgaaaggcagttcattgactaacggttctgatattcattcatccatgccctcgact
gctgtgcaagcagaaatgtcaagagtggtggaaaatcaaaaacaggtggatgaagatgaa
aacatggccaaagtagctatgaagaactcagcagagtctgagtcaaaagcttcagtgaaa
cggtcagtgccaagtgcatcacttacaaaggcaccaaaacaggatcttgccaaggatgat
aataaatcagcaaaagctgttggcagaacttcaggctcttccgccaacgacagagatttc
tcttctcatgcagcagaggggaagcaaggtggagcaaccactgtttcttctgcagctgct
gtcaccgctaatttggtttcggctaaaggctcatcttcatcttcaagagcatcagatatg
catggtaatgaatctaagactgacggtggagttgccaagtcttctgaagtaaggctttcc
actggtaaaagtgatggcaacgaggtttctgatgcaccaaagtcctcttcatcccgaacc
atgcattctccaaggcatgatagctctgttgctgcttccaagtctggtgataggcttcaa
aaaagaactagtccctctgaagatcctgacagaccaagtaaacgttacaaaggggatact
gaattaagagattctgatggtgaagttcgagtacctgacagagagaggtcggcagatcct
cgatttgcagatcttgacaaaattggaacagatgaacagagtatgtataggaccacggat
aggtcaaaagacaagggcaatgaaagatatgaaagggaccacagggaaagattggaccgt
cttgataagtcccgcgtggatgatatcatacctgaaaaacaaagggataggtcaatggaa
aggtatgggagagagcgttcagttgagagaggacaagagaggggtgctgatagagcattt
gataggcttgctgaaaaagctaaagatgatagaaacaaggatgaccgaagtaaattacgt
tacaatgattcatcttcagaaaaatctcacgttgatgaacggtttcatgggcaaagcttg
cctccaccacctcccctacctcctcacattgttccccaatctgtgaatgctggtagaaga
gatgaagatgccgataagaggtttggaagcacccgacattctcaaaggctttctccaaga
catgatgaaaaggaacggagacgatctgaagaaaattccttagtttcgcaggatgatgca
aaacgtagaagggaagatgattttcgagatagaaagagagaagaccgagagggtttgtca
ctgaagatggatgaaagggagagagagagggacagggacagggacagggagaaagccaac
cttttgaaggaggaaatggatgccaatgctgctgcctctaagagaagaaaacttaaaagg
gagcatcttccatcaggggaagctggtgagtattcacctgttgcccctccctatcctccc
cttgctattggtatttcacagtcatatgatggaagagataggggagaccggaagggagcc
gcaatgcagcgcacaggttacatggaggagcaaagtatgaggattcatggtaaagaagta
gccaccaagatggcccgtcgtgattcagagctaatctatgagcgcgagtgggaagatgag
aagcggcaaagagctgaacagaagagaagacatcggaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

Download RDF
DBGET integrated database retrieval system