KEGG   Citrus x clementina (clementine): CICLE_v10024015mg
Entry
CICLE_v10024015mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K10845  TFIIH basal transcription factor complex TTD-A subunit
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03022  Basal transcription factors
cic03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CICLE_v10024015mg
  09124 Replication and repair
   03420 Nucleotide excision repair
    CICLE_v10024015mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cic03021]
    CICLE_v10024015mg
   03400 DNA repair and recombination proteins [BR:cic03400]
    CICLE_v10024015mg
Transcription machinery [BR:cic03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     CICLE_v10024015mg
DNA repair and recombination proteins [BR:cic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     CICLE_v10024015mg
SSDB
Motif
Pfam: Tfb5
Other DBs
NCBI-GeneID: 18045821
NCBI-ProteinID: XP_006440427
UniProt: V4TJW9
Position
Unknown
AA seq 130 aa
RHDMANGTIRARHVYGSGLRKKKNETTQHNMIQRACWARFFLYFFSSSRHSLNAVDCSHG
CSHRATLPPSHHDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF
RDQNSYEKPA
NT seq 393 nt   +upstreamnt  +downstreamnt
cgacatgacatggctaacggtacaatacgggcacgacatgtgtacgggtcaggcttaaga
aaaaagaagaatgaaacgacacaacacaacatgatacaaagagcatgttgggcacggttc
ttcctctatttcttttcgagtagccgccacagcctgaacgccgtagactgtagccacggc
tgctcgcaccgtgctacactgccaccgtcgcaccatgacatacccatggcacaattcatc
atcaatatgaatgcttcaatgccacaatcacagaagttcataatacatattctggatagt
actcacctctttgtgcaaccgaatatggctgaaatgatacggagtgcaattgctgagttt
agagaccagaattcttatgagaagcctgcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (16)   

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