KEGG   Citrus x clementina (clementine): CICLE_v10024686mg
Entry
CICLE_v10024686mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03020  RNA polymerase
cic03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CICLE_v10024686mg
  09124 Replication and repair
   03420 Nucleotide excision repair
    CICLE_v10024686mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cic03021]
    CICLE_v10024686mg
   03400 DNA repair and recombination proteins [BR:cic03400]
    CICLE_v10024686mg
Enzymes [BR:cic01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CICLE_v10024686mg
Transcription machinery [BR:cic03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     CICLE_v10024686mg
DNA repair and recombination proteins [BR:cic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CICLE_v10024686mg
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R MIF4G_like_2
Other DBs
NCBI-GeneID: 18036941
NCBI-ProteinID: XP_006425357
UniProt: V4SDF7
Position
Unknown
AA seq 1860 aa
MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK
FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKKKGGCGAQQPKLTI
EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN
LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL
EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT
LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ
LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP
GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK
PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI
APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM
NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS
EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY
LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP
YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN
PQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYN
AGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSATKDDKNTKGDKSSR
NT seq 5583 nt   +upstreamnt  +downstreamnt
atggatacgcgatttccatactccccggcggaggtggccaaggtccgcatggtccagttc
ggcattctcagtcccgatgaaattaggcaaatgtcagtggtacagattgagcatggtgaa
actaccgagagagggaagccgaagccaggaggtttgagtgaccctaggcttggtacaatt
gacagaaagatgaagtgcgagacttgtacggccaacatggcggagtgccctggtcatttt
gggcatttggagcttgctaagccgatgtttcatatagggtttatgaagactgtgctcagc
atcatgcgatctgtttgcttcaattgctcaaaaattcttgctgatgaggacgatcacaag
tttaagcaagccttgaaaattaggaatcccaagaacaggcttaaaaagattttggatgca
tgcaaaaacaaaactaaatgtgagggtggtgatgagattgatgtacctggtcaagatggt
gaagaacctcttaaaaagaagaagggtggctgtggtgctcagcaaccaaagctgactatt
gaaggcatgaagatgattgcggagtacaaggctcagaggaaaaagaatgatgatcaggaa
caacttcctgaacctgttgaaagaaagcagacacttactgctgaaagggttcttggtgtt
ctaaagaggataagcgatgaggactgtcaactcttaggattgaatcctaagtatgctcgt
ccagattggatgattctgcaggttcttccaattcctccacctccagtgaggccctcggtg
atgatggatacctcctctaggagtgaggatgatttgactcatcaattggcaatgatcatt
cggcacaatgagaatttgaggagacaggagaggaatggggcacctgcacatatcatatcc
gagtttgcacaattgttgcagtttcacatagccacatattttgataatgaattgcctggg
cagccaagggctactcagcgatcaggtagaccgattaaatcaatctgtagtcggcttaag
gcaaaggaagggcgcatcaggggtaacttgatggggaagcgtgttgatttctctgccagg
acggttataacaccagacccgactatcaacattgatcagttgggggtgccatggagcatt
gcattaaatctgacttacccagaaactgttaccccgtataacattgaaaggttaaaagag
cttgttgaatatgggccccatcctcctcctggcaaaaccggtgccaaatatatcataaga
gatgatggtcaaaggctcgatctccgttacttgaagaaaagtagtgatcaccacttggag
cttggttacaaggtggagcggcatctcaatgatggggactttgttctttttaatcgtcaa
cccagtcttcataaaatgtcaattatgggacatagaatcaagatcatgccatactcaact
ttccgcctgaatctttctgttacatcgccatacaatgctgattttgatggtgatgaaatg
aacatgcatgtccctcagtcgtttgaaactagagcagaagttttggagttaatgatggtg
cctaaatgcattgtgtctcctcaatcaaataggcctgtaatgggcatcgtccaggataca
cttttgggatgccgtaaaattactaaaagagataccttcattgagaaggatgttttcatg
aacatattgatgtggtgggaggattttgatgggaaagttcctcaacccacaattttaaaa
cctcggcctctttggactgggaaacaagtttttaatctgatcatacctaagcaaataaat
ctattcagaacggctgcctggcatgcagacaatgacaagggtatactcactgcaggggat
accctagttcgaatagaaaaaggggagctgctttctggaacgctttgcaagaagaccctt
ggcacatccacaggaagtcttatacacgttatttgggaggaagttggtccagatgctgct
cgcaagttcttgggacatacacagtggcttgttaactattggcttttgcagaatgctttt
agtattggaattggagatacaattgctgatgcaaaaacaatggaaactatcaacgatacc
atttctaaagcaaagaataatgtgaaaaaccttattaagcaagcccaagacaaaagctta
gagcctgagcctggacggaccatgatggagtcatttgagaacaaagtgaaccaggttctg
aatacagctcgtgatgaagctggaagtagcgcgcagaagagtttatcagaaagcaataat
cttaaggcaatggtgacagctggatccaaaggaagtttcatcaatatatcacagatgact
gcttgtgtggggcagcagaatgtggaaggaaagcgtatcccatttgggtttgtagatcgg
acattgcctcattttactaaagatgattatgggccagaaagtcgagggtttgtggagaac
tcgtacctgcgtgggctgaccccacaggagttctttttccatgctatgggtggtagggaa
ggtcttattgatactgcagtgaagacttctgagaccggatacatccagaggcggctagtg
aaggcaatggaagatataatggtaaaatatgatggaactgtgaggaactcattgggtgat
gtaatccagtttctctatggcgaagatggtatggattcagtctggatagaatcacagaca
cttgattctttgaagatgaaaaagtcagaatttgataaggctttcagatttgagatggat
gaagaaaactggaacccgaattatatgctgcaagaatatattgatgatttgaaaacaatt
aaagaattacgagatgtttttgatgcagaagttcagaaacttgaagcagatagataccag
cttgcaacggagatagcaacctcaggtgatagttcttggccactccctgttaaccttaag
agacttatctggaatgcgcagaagactttcaaggttgatcctcgaaggccttctgatatg
catccaatggaagtagtcgaagctgttgataagctccaggagaggctgaaagttgttcct
ggtgaagatccattgagtgtggaagcccaaaagaatgccacccttttctttaatatcttg
ctccgtagcacttttgccagtaaaagggtgttgaaggagcacaggcttacccgtgaagcg
tttgagtgggttattggtgaaattgagtcacgattcttacagtcattagtagcacctggg
gaaatgattggctgtgttgctgcacagtcaattggtgaacctgccacccagatgactctt
aatacgttccattatgctggtgtgagcgcaaagaatgtcactctaggagttccaaggttg
agggaaattataaatgtggctaagaaaatcaaaactccttcactctctgtatttctgaaa
cctggcgttaactcaactaaggagagggccaagaatgttcaatgtgcactagagtacact
actctccgtagtgttactgaagctacagaagtatggtatgatccagatcccatgggcaca
attattgaagaggatgttgaatttgtcaagtcttactatgagatgccagacgaggacatt
gcacctgaaaaaatatctccttggttgcttcgcatagagctgaatcgggaaatgatggtt
gataagaaattaagcatggcagctgttgctgagaagataaatcaggagttcgatgatgat
ttgacttgcatattcaatgatgataatgctgataaactcatccttcgtattcgcataatg
aatgatgaagctccaaagggagaattgaatgatgaatcagctgaagatgatgttttcttg
aagaagattgagagtaacatgctgacagaaatggctcttcgaggtatccctgatatcaac
aaggtgtttattaaaaagggtaaaacaaccaaatatgatgataatgaaggatttaagtcg
gaagatgagtggatgctggatactgaaggtgtgaatcttttagccgttatgtgtcatgaa
gatgttgatgcgagaaggacaacaagcaatcacttgattgaaataattgaagtactagga
attgaggcagttcgtcgggcgctattggatgaattgagagtagttatatcttttgatggc
tcttatgtgaattaccgacatctggctatactttgtgatacgatgacctatcgaggccac
ttgatggccatcactcgtcatggcatcaacaggaatgatactggaccaatgatgagatgt
tcatttgaagaaacggttgacattcttcttgatgctgcagtctttgcagaatcagattat
ttgaggggggtcactgagaatataatgttaggtcagcttgcgcctattgggacaggagac
tgttcattgtatctcaatgatgagatgctgaaaaatgccatcgaacttcagcttcctagt
tatatggaaggtctggagtttggcatgacacctgctcgttctccggtgtctgggactcct
tatcatgatggcatgatgtctccaggttacttgtttagcccaaatctccgtctgtccccg
gtcacggatgcccagttttctccttatgttggtggaatggccttctctcctacttcatca
cctggatacagcccatcatcaccaggctacagtccgtcatctcctggatacagtcccacg
tcacctggatacagcccaacttcacctggatacagtcccacctcgcctggatatagccct
acctcaccaacttatagtccaagttctcctggttatagtccaaccagtcctgcctattct
cctaccagtccatcgtactcacctacttcaccaagctatagcccaacctccccaagttac
agcccaacatccccaagctacagcccgacctctccaagttacagccccacttctcccagt
tacagtccaacttcaccaagctatagccccacctcaccggcatatagccccacctcacct
gcatacagccccacctcacctgcatacagccccacttcaccatcgtacagcccaacctct
ccttcctacagcccaacatcaccttcgtacagccctacctcaccgtcatacagccccact
tctccatcgtacagccccacttcaccagcctatagccccacttctcctggttatagtcca
acttcaccaagttatagcccaacttcaccaacctatagtcctacatccccaagctacaat
cctcagtctgccaaatacagtccgtcgctggcctactcaccaagtagtccaagattatct
cctgccagtccgtacagccctacatctccaaattacagtccaacatcatcttcgtattca
ccgacatcgccctcttattctccttcgagcccaacatacagccctagcagcccatataat
gctggaggtggaaacccagactatagcccaagttcacctcagtatagtccaagtgctggg
tactctcccagtgcaccggggtattccccatcgtcgactagtcagtatacaccacaaaca
aatagagatgacagtgcgacgaaagatgacaagaacaccaaaggtgacaagagctcacgt
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (24)   

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