KEGG   Citrus x clementina (clementine): CICLE_v10028135mg
Entry
CICLE_v10028135mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K10140  DNA damage-binding protein 2
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03420  Nucleotide excision repair
cic04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    CICLE_v10028135mg
  09124 Replication and repair
   03420 Nucleotide excision repair
    CICLE_v10028135mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cic04121]
    CICLE_v10028135mg
   03400 DNA repair and recombination proteins [BR:cic03400]
    CICLE_v10028135mg
Ubiquitin system [BR:cic04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     CICLE_v10028135mg
DNA repair and recombination proteins [BR:cic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      CICLE_v10028135mg
SSDB
Motif
Pfam: WD40 PQQ_3 NBCH_WD40
Other DBs
NCBI-GeneID: 18033635
NCBI-ProteinID: XP_006425057
UniProt: V4SCP7
Position
Unknown
AA seq 546 aa
MAPQTRRMAFPRVVIDRDTDTEQSSSEDEEEDREEGPFSESEEEVTENGREEKIEEDLDA
KRKGKAPITISLKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHTTMSCPHRVAT
EYGVTPASHRNAGNPVEYVFERQLRPNMPHMKPAHVIPDQVNCAVIRYHSRRVTCLEFHP
TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS
CTDLETGLALSLMNINPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDTRTNSR
SGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVN
SAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPS
ESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG
SSRSIFIWRPKEKSELVEQKEEMKIIVCGKADKKQKHKFGDESEDSDDDTSKLKRKNVRS
KKSRKS
NT seq 1641 nt   +upstreamnt  +downstreamnt
atggccccgcaaacgagaagaatggcgtttccgagagttgtgattgatagagacacggac
actgagcagagctcatcggaagacgaagaagaagaccgggaggagggcccattttcagaa
tcagaagaagaagtaacagagaatggacgtgaggagaaaattgaagaggatttggatgca
aagagaaaagggaaagctcctattaccatcagtcttaagaaagtttgcaaagtttgtaaa
aagccgggtcatgaagcaggatttaaaggagcaacatatatagattgtccaatgaaacct
tgctttctttgcaaaatgccaggtcacacgacgatgagttgccctcatagagttgctacc
gagtatggggtcactccagcatcccatagaaatgccggcaacccagtagaatatgtcttt
gagcgacagctcagacccaacatgcctcatatgaagcctgcacatgtgatcccagatcaa
gtaaactgtgcagtcatcagatatcatagtcgacgagtgacatgtttagagttccatcct
acaaataatcacatccttttatccggagataagaaaggacaagttggagtctgggatttt
tacaaagtatctgaaaagatagtttatggaaacatacattcctgtatagtcaataacatt
aggtttaaccctacaaatgatggtactgtttatgctgcatcctctgatggaactgtcagt
tgcacggacttggagactggcttggcgttatctttgatgaacattaaccctaatggatgg
catggcccacgtacttggaggatgctttatggcatggatatcaatccagagaaaggggtt
gtacttgttgctgataattttggttttctttacctggtggatacacgaaccaatagcaga
agtggggaggcaatcttgatccaccgaaaaggtagcaaagttgttggtctgcattgtaat
cctattcaaccagaactgcttttaagttgtggaaacgatcactttgctcgtatatgggac
atacggcgattagaagctggatcttctctctgtgaccttcctcacaaacgtgttgttaac
tcggcatatttctctccgtccggtagcaaaattcttaccacttcacaggacaaccgactt
cgtatttgggattctatctttggcaatttggactctccaagcagagaaattgtgcacagt
catgattttaatcgccatctgacaccttttcgagctgaatgggatccaaaggatccatcg
gagtcccttgcagttattggtcgttatataagtgaaaattataatggagctgctctgcat
cccatcgatttcatagatatcactacgggccaattagttgctgaggttatggatccaaat
attacaactatcagtcctgtgaacaagctacatccacgagatgatgttttggcatctggt
agttcgaggtctattttcatttggaggccaaaggagaagtcggaactggtggaacagaag
gaagaaatgaagattattgtctgtggaaaggctgataaaaagcaaaagcataagtttggg
gatgaaagtgaagattctgatgacgacacatccaagttaaagcgcaagaatgtcaggtct
aagaagtcgagaaaaagttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (20)   

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