KEGG   Coccidioides immitis: CIMG_07033
Entry
CIMG_07033        CDS       T01114                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
cim  Coccidioides immitis
Pathway
cim03018  RNA degradation
cim03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cim00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CIMG_07033
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CIMG_07033
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cim03019]
    CIMG_07033
   03041 Spliceosome [BR:cim03041]
    CIMG_07033
Messenger RNA biogenesis [BR:cim03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CIMG_07033
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CIMG_07033
Spliceosome [BR:cim03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CIMG_07033
SSDB
Motif
Pfam: LSM SM-ATX LSM14 RnlA-toxin_DBD DUF6263
Other DBs
NCBI-GeneID: 4561411
NCBI-ProteinID: XP_001243137
UniProt: Q1DRN0
AA seq 80 aa
MESRGAADSQDPSAFLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEFVNGKL
RKSYGDVFVRGNNVLYISAD
NT seq 243 nt   +upstreamnt  +downstreamnt
atggagagcagaggagccgccgacagccaggatccctcggcatttctcagcgggatcact
ggcgcatccgtgacggtcaagcttaattctggcgtcgtctacaaaggcgaactgcagtct
atagatgggtatatgaacatcgccctggaaaagacgcaggaatttgtcaacggaaagtta
agaaaatcctatggcgatgtctttgtacggggaaataatgtcctttacatctcagccgac
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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