KEGG   Coccidioides immitis: CIMG_13063
Entry
CIMG_13063        CDS       T01114                                 
Symbol
CIMG06527
Name
(RefSeq) DNA repair helicase rad25
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
cim  Coccidioides immitis
Pathway
cim03022  Basal transcription factors
cim03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cim00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CIMG_13063 (CIMG06527)
  09124 Replication and repair
   03420 Nucleotide excision repair
    CIMG_13063 (CIMG06527)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cim03021]
    CIMG_13063 (CIMG06527)
   03400 DNA repair and recombination proteins [BR:cim03400]
    CIMG_13063 (CIMG06527)
Enzymes [BR:cim01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CIMG_13063 (CIMG06527)
Transcription machinery [BR:cim03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     CIMG_13063 (CIMG06527)
DNA repair and recombination proteins [BR:cim03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     CIMG_13063 (CIMG06527)
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C SNF2-rel_dom DEAD AAA_34 DUF4677
Other DBs
NCBI-GeneID: 24164690
NCBI-ProteinID: XP_001242631
UniProt: J3K8B8
AA seq 832 aa
MPPKRKAVDGSRVGRASKRATPVPSSTPQSVLSDDDYTDPGVQNSDVDGDNIKKVVEKFS
LQTFSRDKKSQVLKQDPHFGYKDFSSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAQ
DFLTTIAEPLSRPTHLHEYRLTGNSLYAAVSVGLLPADIINFLDRLSKTPLPETIKQFIV
NFTKSYGKIKVVLKHNRFFVESSDPAMLQTLLQDEVIGAQRVENSEGIIQQAAPKMGGLV
IPGTKDAAGLRQNPDQKPENGEGEAPPLKDDDLLVSLRDEDDDDEDQAQVHSFEIPNTSV
EAVKARCQSMGCPALEEYDFRNDEINPTLDIDLKPNAQIRSYQEKSLSKMFGNGRAKSGI
IVLPCGAGKTLVGITAACTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPNDIAIFTSDNK
ERFRRSTGIIVSTYSMVSQTRARSHDAEKMMDWMQSREWGLMILDEVHVVPASMFRKVTS
AIATQTKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTT
EFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVIVFSDNVYALERYALKLN
KAYIYGGTPQNERLRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQE
AQRLGRILRAKRRNDEGFNAFFYSLVSKDTDEMYYSSKRQAFLVDQGYAFKVITHLQGIE
NLEGLAYATAAERRELLQEVMLQNETSAAVEEVVDDLFSERSGGPRAKAARKAAVKRSAA
TLSGLAGGEDMAYIEHNKSRNKQLKEKVSHHPLFRKFERERQKRKKLLQEGR
NT seq 2499 nt   +upstreamnt  +downstreamnt
atgcctcccaaaagaaaggctgtcgatggctcccgggtaggaagagcctcaaagcgcgcc
acgccggtcccgagttccacaccacagagcgttcttagcgatgatgattacacagacccc
ggtgtgcagaattccgatgtggatggagataatataaaaaaggtcgtggagaaattctcc
ctccagacctttagccgcgacaagaagtcccaggtattaaaacaagatcctcattttggg
tataaggatttttcgtccttgccattgaagcccgaccatgcgaatagaccactatggatt
gagcccttgaagggaacgatcaccttggagagcttctcgccgttagcctcgcaagcgcaa
gactttcttactacgatagccgagcccctatctcgtcctacacatcttcatgaatataga
ttgaccggaaatagtctctacgctgctgtatcggtggggctgctgcccgcagacatcatt
aactttctcgatcgactttcgaaaacgccgctccctgagaccataaagcagtttatcgtg
aatttcacaaagtcctatgggaagattaaagttgttctaaaacataatcgattttttgtc
gaaagctccgatccagcgatgctgcagacgttgctacaagatgaagttatcggtgcgcag
agggtcgaaaactcagagggcattatacagcaagctgctccaaaaatgggcgggctggtt
atccctgggacaaaggatgctgccggccttaggcaaaatcctgaccagaaacctgaaaat
ggagaaggagaagctcctccactcaaggacgatgatttattggtctcgctaagagacgag
gacgacgatgatgaggatcaggcgcaggttcatagttttgaaattcctaacacaagtgtg
gaagccgtgaaagcgcgatgtcagagtatgggttgtccggcattggaagaatacgatttt
cgcaatgacgagataaacccgaccttggatattgatcttaagcccaacgcccaaatccgg
agctatcaggaaaaaagtttaagtaaaatgtttggaaacggtcgagcgaagagtggaatc
atcgtcttgccctgcggagcaggaaagactctagttgggattactgcggcgtgcacaatc
aagaaaggaactatagttctgtgcacaagttccatgtcggtcgttcaatggcgcaatgaa
tttttacgatggtcgaatattgatcctaatgacatcgctatatttacctctgacaataag
gaaaggttcagaagaagtactggtatcatcgtttcgacatactctatggtttcgcaaact
cgcgctagatctcatgatgccgagaagatgatggactggatgcaatctcgggaatggggt
ttaatgatcctggacgaagtccatgtcgtgcccgcatccatgttccgaaaggtcacctct
gctatcgccacccagacaaagcttggtttgacggcgacgttgctgagagaagacgacaag
atcaaggatcttaacttccttattggacctaaactctatgaagccaactggatggaactg
gcggagcaaggtcacatcgctaaagtccaatgtgcagaagtctggtgccccatgacaaca
gaattctatactgaatatatgcgtgaaaagtcgagaaaggctgctctgctatatatcatg
aatccaaggaagttccaggcatgtcaatttctgatcgactatcatgagaaacgcggagat
aaggttatcgtcttttccgataatgtctacgcgttggagcgatatgccttgaagttgaac
aaggcatatatctatggagggactccacaaaacgagcgtttgcgaattctggaaaatttc
caacataatgagcaggtgaatacgatattcctctcaaagattggagatacttccttggat
cttccagaggcgacctgcctgatccaaatatcatctcactacggctctcgacgtcaagag
gcccagagattaggacgcatcctccgggctaaacgcagaaatgatgaaggttttaacgcc
tttttctactcgttagtctccaaggatacggatgaaatgtactattcctctaagcgacag
gcatttttggtcgatcagggttatgcttttaaggtcatcacgcatctccaaggtattgag
aacctcgagggtctcgcgtatgctaccgcagcggaacgtcgtgagctcttacaggaagtc
atgttgcagaatgaaacgtctgctgccgttgaagaagtagtcgatgacctatttagcgaa
cgttctggcgggccgagggctaaagccgctagaaaagctgctgtgaaacgcagtgctgcc
acgctgagcgggctcgcaggtggcgaagatatggcttacattgagcataataagagcaga
aataaacaactgaaggagaaagtaagccatcatccgctgttcaggaaatttgaaagggag
agacagaagcgaaagaaactcttgcaggaaggccgataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (41)   

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