KEGG   Ciona intestinalis (yellow sea squirt): 100170067
Entry
100170067         CDS       T01056                                 
Symbol
zf(cchc/grf)-1
Name
(RefSeq) DNA topoisomerase 3-alpha
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03440  Homologous recombination
cin03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    100170067 (zf(cchc/grf)-1)
   03460 Fanconi anemia pathway
    100170067 (zf(cchc/grf)-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cin03032]
    100170067 (zf(cchc/grf)-1)
   03400 DNA repair and recombination proteins [BR:cin03400]
    100170067 (zf(cchc/grf)-1)
Enzymes [BR:cin01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     100170067 (zf(cchc/grf)-1)
DNA replication proteins [BR:cin03032]
 Eukaryotic type
  DNA Topoisomerases
   100170067 (zf(cchc/grf)-1)
DNA repair and recombination proteins [BR:cin03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     100170067 (zf(cchc/grf)-1)
   FA (Fanconi anemia) pathway
     100170067 (zf(cchc/grf)-1)
SSDB
Motif
Pfam: Topoisom_bac zf-GRF Toprim
Other DBs
NCBI-GeneID: 100170067
NCBI-ProteinID: XP_026693420
Position
14:complement(153207..162941)
AA seq 844 aa
MFYKAAFIVLTHHRILMPRHASTFKVLSVAEKNDAAKRISDILSGHQYQVRNGFSKYNKI
YEFSYHMLGQNCAMSVTSLSGHLLNYNFAGIYKKWHSCHPLSLFDVEVEKIVTENMVDIK
RTLEREVRNSQALVIWTDCDREGENIGFEIINICRNIKPNIPVYRARFSEITDRSIKSAC
RNLQQPDQNTSDAVDVRQELDLRIGAAFTRFQTLRLQKVFPHVLSDKLISYGSCQFPTLG
FVVERYKAREQFQPEDFWKIEVTHTTTQHNDDGPVTSTFSWKRNRLFNELACRVLYANCM
EPPVVATVTNVSSRPRSKWRPVAMETVELEKLASRKLRINAKETMKIAETLYTQGYISYP
RTETNIFPKDFDLERLVGEQTNHPAWGNFARDLLALEGGPQPRNGHKSDQAHPPIHPTKA
ASNLSGNNARIYELIARHFLACCHRDAKGHETTVDIILGGEEFNAQGLMIIERNYLEVYP
YDRWNGKIIAVYNIGDEFEPTGLNMPGGRTTAPPLLTEADLIALMDKHGIGTDATHAEHI
ETIKQRMYVGLTSDQRFLPGELGMGLVEGYNLMGYEMSRPELRAELEFGSRYTNNQHTAS
NQHRGASNARQGNAHRGAGSRPGAGGSGGFGGNGPRGGGSRPGGGSGGHTGAGPGVLSSR
GSRGGVKKGGTRKKSTLAATRSDENVPACQCGEVSIVLTVRKDGPNTGREFYKCGKQNGG
CDFFMWVDNNNQSTQQQTSFTSGLNNRNIKSSIRVSGDVMCKCDIPATQRTVQKEGANKG
RMFYTCDKPRDAQCGFFEWCDSMQNTAPTPSTSHNQPRAAKRKRPPTCGLCKEVGHTKRG
CPNK
NT seq 2535 nt   +upstreamnt  +downstreamnt
atgttttacaaagctgcttttatagttttaactcatcacagaatattaatgccacgacac
gcgtctacttttaaagtgttgagtgtggctgagaagaatgacgctgctaaaagaatatca
gatattttatcagggcaccaatatcaagtgagaaatggtttttcgaaatacaacaagatc
tacgagttcagctaccacatgctggggcaaaactgcgcaatgtccgttacttctctatct
ggtcatctgcttaattacaactttgctggaatttataagaaatggcattcttgtcatcct
ctaagtttatttgatgttgaagtggaaaagatagtgacagaaaacatggtggatatcaag
agaacattggaaagagaagttcggaacagccaagcgttagttatttggacagattgtgat
cgggagggagaaaatattggattcgaaatcattaatatttgtcgaaatattaaaccgaat
atacccgtgtatagagcacgattttctgagataactgacagatcaataaaatcggcgtgt
cgtaatctgcaacaacccgatcaaaacacgagcgatgcagttgatgttcgacaggaactc
gacctcagaatcggagctgctttcaccagatttcaaacccttcgtctgcagaaagttttc
cctcatgttttatcggataagctgataagttacgggagttgtcagtttcctacattaggg
tttgtggtggaaagatacaaagcaagggagcagttccaacctgaagacttctggaagatt
gaggtcacccacaccaccacccaacataatgatgatgggcctgtcaccagcacgttctca
tggaaaagaaatcgattgtttaacgagcttgcatgtcgggtgttgtacgctaactgcatg
gaacccccagttgttgccacggtaaccaacgtatcgagtcgcccccggagtaaatggcgt
cctgttgctatggagacagtagagttggagaaattggcttctcggaaattaaggataaac
gcaaaagaaacgatgaaaattgcagaaacattgtatacacaaggatacatcagttaccct
cgtactgaaacaaacattttcccaaaagattttgaccttgaaaggttggttggtgaacaa
acgaatcacccagcatggggaaactttgcaagggatttacttgctttagaaggaggacca
cagccaaggaacggacacaaatctgaccaagcccacccccccatccatccaactaaagct
gcatctaatctatctggcaacaatgcaaggatttatgagttgattgcgcgccatttcctt
gcttgctgtcaccgagacgcgaagggccatgaaacgacagtagacataatacttggtggt
gaggagtttaacgcacaaggtttgatgattattgagcggaattaccttgaagtttatcct
tacgaccgttggaacgggaagataatagcagtttacaatattggcgacgaatttgaaccc
accggtttaaacatgcctggtggaagaactacagctcctccattgttaactgaagcggat
cttattgcattaatggataagcatgggatcggtaccgacgccactcatgcggaacacata
gagacaataaaacaacgaatgtacgttgggttaacgagcgatcaacgatttctaccgggg
gaattagggatggggttggtggaaggatacaacttgatgggatatgaaatgtcacgccca
gaactaagggcagaacttgaatttggttccagatacacgaacaatcaacatactgcaagt
aaccaacatagaggtgcaagtaatgcaaggcagggtaatgcccacaggggtgcgggatca
agacctggtgctggtggctcaggaggttttggtggtaatggcccaaggggtgggggatca
agacctggtggtggtagtggtggtcacacaggtgctggtccaggtgttttgagttccaga
ggttctagaggaggtgttaagaagggtgggacaaggaagaaatcaacgttagcggcgaca
cgaagcgatgaaaacgttcccgcttgtcagtgtggggaggtttctattgttcttactgtg
aggaaagatggaccaaatactggaagggagttttataaatgtgggaagcagaatggaggg
tgtgacttctttatgtgggttgataataacaaccaatctactcaacaacaaaccagcttt
acctctgggttaaataatagaaatattaaatctagcataagagtatcaggcgatgtgatg
tgtaaatgtgatattcccgcaacccaacgcactgtacagaaggaaggggcaaataaaggg
aggatgttttacacttgtgacaaacccagggacgcacaatgcggtttctttgagtggtgc
gactcaatgcaaaatacagctccaacccccagtacttctcacaaccagccacgagccgca
aagcgaaaacgacctcccacatgtggattatgcaaagaagttggccacactaagagagga
tgtccgaataaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (66)   
   KEGG ORTHOLOGY (1)   
   RefGene (62)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (81)   

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