KEGG   Ciona intestinalis (yellow sea squirt): 100176478
Entry
100176478         CDS       T01056                                 
Name
(RefSeq) uncharacterized protein LOC100176478 isoform X2
  KO
K20687  Rho guanine nucleotide exchange factor 15
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cin04131]
    100176478
Membrane trafficking [BR:cin04131]
 Others
  Rho GTPase associated proteins
   Rho guanine nucleotide exchange factors (GEFs)
    100176478
SSDB
Motif
Pfam: RhoGEF SH3_1 SH3_2 SH3_9 ECT2_PH SH3_16
Other DBs
NCBI-GeneID: 100176478
NCBI-ProteinID: XP_018670004
Position
12:2153543..2178015
AA seq 1470 aa
MMDKTRQNYNNHNSNGSSRPSVAPKPATTKPAIPSKPAHLKSIKKKEGSKVSEEKTNTRG
NLTRIPSVDHTTPRSWVSKPTLSLPKKEQLGGAEKKPDGPVPKSPFAKPWRPAPQLKLNK
DRIPKPINDTFTIVEEKVGSVSKAKTASPKNDYGCAIKNNQVTVEPKVKVGLEEKANKPS
TLQVNNQPQGRTGIQHRSSFLRDPKSPGFGTIRAMWNTKVKTPSNNLPSPILTSPKPFEV
TKRPVTKTRSVAVTTGNPLMWQHVQGPRPQAPHNSGIQMGETKRRTSSLSYQAPLPFRSA
SISEETEPTVSNELIEENESKQSEDIFKFEDREKSLPELENCQKSFLYSYSTAKPKIPTP
EPEETNEKQPAPTFSDPPVGIYQSYSSDDSEASLPPVDKSSDSSVMEANLTAVGVYEDFD
ENDETVTAAVYSFAQQVDNLPSDPIPAYGYLPMSGASSTTEINYEQMDSDVKLESIDYTS
QVVPPPVIKKKSTREYHEIDPNGNISVPPPPTREAPKLPTHFNNQPQQLEYEPPPLPPDN
PVGRRSVVFSKQKKLMVVQQLKENTSMKKLNYIDVEVTSNSSGGPRSNPVHRKTNYSDVT
VLSESDARNSEKNESGDENLSSNKKQKDRKKKSSFLPFSSKDNTSSSPKSAKEEVLTDFE
KERNKIKRISGRFRRKKDKDKKKKDRNSDGSISQSFESDSGYDIDSSSTTVSSETSQSYT
INTSSGSAQSSGDGEVRALQCGVPYAYGDSGDTKKWHKVLPTTKDAVERRRSSDATSPFK
RNERIYKKSLSHGNIESTMSVYPPETDGCTSDRNSGNYEGSPNKDPPKVSSFLHCGPPNI
NPPDRPPPKPTNPSPRHGDPMNPTPRHRMSFPLPGLAPSVPRPISPGLPTSPPPFPPERS
PSRDSRPKPLSRVIPPSPQLHPPTTDPIYSTPEGESDGETPPPLPERDAIYEGVDVLNVV
PPSPCGILNRSKLLDSEPLYQIYRSRTLSHASTKRSAAARARNQTVPETGTQWKSELMSE
DLGTSTLWREIPEVADSGHPKDMSKDQIKLQQSQFEVITSQASYLRSLNILVHHFMEDWA
MESTDVLPSTDRKRLFSNIESVKNVEQRFLEDLEKHFWSDLKLTKVCDVIAKYAKQDFSV
YILYIQNQVYQDRVLTKLQRNHELFAENLCRLESSSACNKLPLLSFLLLPMQRVTRLPLL
VSAIVNAADAAGEPKMLKIAKHTLGVVNKLVKKCNEGAKKMQQTEQLAEIASQLDYSSSV
KMFALVSQSRSLVKKGEMNVSMSVDSKKSTKLNKLWLFLFTDVMFIARKKSYMESGSSSR
FEVVDWAKRSLLYVNEQAVTENLIYLILLENQAGKRVEMTLNPVSQNELSRWTDALSPPS
LNTTGESIYETWDCPQFQCVLPYIAEQPDELTIDVGDVMQVLKKTSDGWLEGERLRDGET
GWFPRQNCDEIEDEHTRARNMKNLYRTFAG
NT seq 4413 nt   +upstreamnt  +downstreamnt
atgatggataaaactcgccaaaactacaataaccataacagtaatggctcatcaagacca
agtgttgcgcctaaacctgccacaactaaacccgccataccttctaaacctgcgcattta
aaatcgatcaagaaaaaggaaggtagtaaggtttctgaagaaaaaacaaacacgagagga
aacttaactcgtattccatctgtggaccacacgacgccacgttcctgggtgtcaaaacca
actttgtctctgccgaaaaaagaacagcttggaggagctgaaaagaagccagatgggcct
gttccaaaaagcccctttgcaaaaccatggagacccgcccctcagcttaaattgaacaag
gatagaattcctaaaccaatcaacgatacttttacaattgtagaggaaaaagttggctct
gtatctaaagcaaaaactgcatcacctaaaaatgactatggatgtgctattaaaaataac
caggtaacagttgaaccaaaagtaaaagttggcttggaagaaaaggcgaataagccatct
acattgcaagtaaataaccaaccacaaggaagaacagggattcaacacagatcttcgttt
cttcgtgacccgaaaagtcctggttttggaacaattcgtgctatgtggaacaccaaggtg
aaaacaccatccaataacctcccatctccaatattaacaagccccaaaccatttgaagta
accaaacgcccggttacaaaaactcgctctgttgctgttactacaggtaaccccctaatg
tggcagcatgtgcagggaccccgaccgcaagccccacataattctgggatacaaatgggt
gaaacaaagcggcgtacatcgtcgctaagttaccaagcacctttgccttttcgaagtgct
tcaataagtgaagaaactgaacccacagtcagcaatgaattaattgaagaaaatgaatca
aagcaatctgaggatatttttaaatttgaagaccgtgaaaaatcgctacctgaattggaa
aattgtcaaaaatcatttctttactcatactccactgccaagccaaagattcccacccct
gaaccagaagaaacaaacgaaaaacaaccagctcccacattcagcgaccctcctgtcggt
atctaccaatcttacagcagcgatgacagcgaagcgtcactgcctccagtggacaaatct
tccgactccagcgtcatggaagccaatttaacagcggttggagtgtatgaagattttgac
gaaaatgacgaaactgttacagctgcagtttacagctttgcacagcaagtagataacctt
ccatcagacccaatacctgcttatggatatttaccaatgtctggagcttcttctacaact
gagatcaactatgagcaaatggactcagatgtgaagcttgaaagtatagattacaccagc
caagtggttccaccaccggtaataaaaaagaaatcaacgagggaatatcatgaaatcgat
cccaacggaaatatttcggtcccacctccacccacaagggaagctccgaagttacccacc
cactttaacaaccaaccccagcagttagaatacgagcccccacccttaccccctgataac
cccgtgggtcgacgaagtgttgtgttttcaaagcagaagaaacttatggtggtacagcag
ctgaaagaaaacacctcaatgaagaaactgaactacattgatgtggaagtgacttctaac
tcttctggaggacctaggagcaatcctgttcatcggaagactaattactccgatgttaca
gtccttagtgagagtgatgcaagaaattctgagaaaaatgaatccggagatgagaatctg
tcttctaacaaaaaacaaaaagatcgaaagaagaaaagttcatttcttcctttctcatct
aaagataatacttcatcttctcctaaatcagccaaggaagaagtactgacagattttgag
aaagaacgaaataaaataaagaggattagtgggcgatttagacggaaaaaagataaggac
aagaagaaaaaagatcgcaacagtgacgggtcaatttctcaaagttttgaatccgattca
ggatatgacatcgacagttcttcaacaacggtatcttcggaaacctcacaatcttacaca
ataaacacgagcagtggtagtgcacaaagttcgggagatggtgaagtccgagcattacaa
tgtggtgtgccatacgcatatggggacagtggagacaccaaaaaatggcacaaagtgttg
ccgactacaaaagacgcggttgagcgaagacgaagcagtgatgcgacaagtcctttcaaa
cgcaatgaaaggatatacaaaaaatcgcttagtcatggtaacattgaatccactatgtcg
gtctatccacctgaaaccgacggttgcacatcagacagaaactctgggaattatgaaggc
tcaccaaacaaggatcctccaaaagtttcgagttttcttcattgtggcccacccaacata
aacccccctgatcgacccccacctaaacccacaaacccatcacccaggcatggagatccc
atgaaccccaccccacgtcacagaatgtcattccccctcccaggtttagccccctctgta
cctcgccctattagtccggggttgccgacatcacccccacctttccccccagaaagatcc
ccatccagagattccagacccaaacccctgtcgagggtgattcccccttcaccccagctt
caccccccaacaactgaccccatatattcaacaccggagggtgaaagcgatggggaaacc
ccaccaccattaccagaacgtgatgctatatatgaaggggtggatgtgttaaacgttgta
cccccttcaccgtgtggaattctgaatcgttcaaaacttttggattctgaaccattgtac
cagatttacagaagccgcacgttatctcatgcgtctacaaaaagatccgcagctgccagg
gctagaaaccaaactgttccggagacaggcacacagtggaagagtgaattgatgtcagag
gaccttggaacatccacactgtggagagaaatcccggaggttgcggacagtggtcatccg
aaggacatgagcaaggaccagatcaagctgcaacagtctcagtttgaggtgatcacatcc
caagcttcatatcttcgtagtctcaacatccttgtgcatcattttatggaggattgggcc
atggagtcaactgatgttctcccatccacggatcgaaagcgactcttctcaaacatcgaa
tctgtgaagaacgtggaacagaggttcctcgaagatttagaaaaacacttctggtctgat
ttaaaactgacaaaagtatgcgacgttattgcaaaatatgcaaagcaggacttctcagtt
tatatactgtatatacaaaaccaggtctaccaagacagggtgctcactaaactacaaaga
aatcacgaattatttgccgagaacttatgtcgtcttgaatcctcctccgcgtgcaacaaa
ctccctctcctctccttcctcttgctcccgatgcagagagtcactcgtctcccactcctt
gtctccgcaatcgtcaacgcagcggacgcagccggagaaccaaagatgctgaagattgcc
aaacatacactcggagttgtaaacaagttggtcaagaaatgcaatgaaggagccaagaaa
atgcaacaaacagaacaactcgcagaaattgcttcccaacttgattattcatcttctgtc
aagatgtttgctctcgtttcacaatcaaggagtttagtgaagaaaggagaaatgaatgtg
agcatgtcagttgattcaaaaaaatccacaaaactcaacaaattatggttgtttctattc
actgatgtcatgtttattgcaaggaaaaaaagctacatggagtcaggttcaagctccagg
tttgaggttgtggattgggcaaaacggtcgctactatatgtcaatgagcaagctgtcaca
gagaacttaatttatctcattctgttggaaaaccaagctggaaaaagagtcgaaatgaca
ctcaacccagtcagccagaatgagttatcacgttggacggatgcattaagccctccatca
ctaaatacaacaggggagagtatatatgaaacatgggattgcccacagtttcagtgtgtg
ttgccatacattgctgagcaaccagatgaactaactattgatgttggtgatgtaatgcaa
gttcttaagaaaacttcagatggttggttagagggtgagagactacgtgatggggaaaca
gggtggttcccccgtcagaattgtgacgaaatagaagatgaacacacacgagcgaggaac
atgaaaaacttgtaccggacattcgctgggtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (88)   
   KEGG ORTHOLOGY (1)   
   RefGene (84)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (105)   

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