KEGG   Ciona intestinalis (yellow sea squirt): 100177802
Entry
100177802         CDS       T01056                                 
Name
(RefSeq) CUGBP Elav-like family member 1 isoform X3
  KO
K13207  CUG-BP- and ETR3-like factor
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cin03041]
    100177802
Spliceosome [BR:cin03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    100177802
SSDB
Motif
Pfam: RRM_1 RNA_bind RRM_5 Nup35_RRM_2
Other DBs
NCBI-GeneID: 100177802
NCBI-ProteinID: XP_002121627
Ensembl: ENSCING00000003762
Position
2:5212125..5221383
AA seq 498 aa
MNGNSAGPPAHGDQPDPDAIKMFIGQIPKTWVESEVREFLEGYGPIYQLNILREKGSVMS
KGCCFVTFYTRKAALAAQNELHNMKTLPGMHHCVQMKPADSENKSEDRKLFIGMISKKMT
EQDLRQLFCPFGNIEECRILMNPDGVSKGCAFVTYSKRVSAQNAIRNMHQSTTMEGCSAP
IVVKIADSPKDKERKKTQSQLAMQLNQFSNQWKNLSGLAALAPVLQSLACNNQYNAPSNQ
HNSGVFSTTQLQQALTIAAAAQTLLSNQPSSVSHNNSNSVPGSSGISSMTSQYGGNVCAS
PSGTSYRSHSHNSNMWAQQHSAPYPSAGMNNGMSSGCSSTSPLDPMTMNLAQQSGSNLTL
DLNHSPSSTATGINPTAHMLAALTSPTSMYNQSMMHPHNSSPAGSHKEGPEGSNLFIYHL
PTHFTDHDLMQTFFTFGTIVSAKVFIDKQTNLSKCFGFVSYDNPASAQHAIQAMHGFQIG
MKRLKVQLKRPKGESKAY
NT seq 1497 nt   +upstreamnt  +downstreamnt
atgaacggtaattcagcaggtcctcctgctcacggggatcagccggacccagatgcgatt
aagatgttcataggtcagattcccaaaacatgggttgaatctgaggtgcgtgagtttctc
gagggttatgggccaatctaccaacttaatattctaagagaaaagggtagtgttatgagc
aaaggctgttgctttgttacattctacactcggaaggctgcacttgctgcacaaaatgaa
ctacataatatgaaaactttgccagggatgcatcactgtgttcaaatgaagccggcagat
tcagaaaacaaaagtgaggatcgcaagctctttattgggatgattagtaaaaagatgacg
gagcaagaccttcgtcaattgttctgtccatttgggaacatagaggagtgtagaattctt
atgaatcccgatggtgtaagcaaaggatgtgcgtttgtaacttattcgaaaagagtttca
gctcaaaatgcaatacgcaacatgcaccagtccacaaccatggagggttgctctgcgcca
attgtagtgaagatagctgattcaccgaaggataaggaaaggaagaaaacacaatcccag
cttgccatgcaacttaaccagttctctaatcagtggaagaatctgtctggtttagcggca
ttagctccggttcttcaaagcttggcttgcaacaaccaatacaatgcacccagcaaccaa
cacaactcaggtgttttttcaacgacccagctccaacaagcactcacgatcgctgctgct
gctcagacactcctaagcaaccagccctcaagtgtctcgcacaataattccaactccgtg
cccggaagcagtggcatttcgtcaatgacatcacaatacggtgggaacgtgtgtgcgagt
cccagtggaactagctacagatcgcatagtcataattcaaacatgtgggctcaacaacat
tcagccccatacccaagtgctgggatgaacaacgggatgagttctggttgctcctccaca
agtcctcttgatccgatgacgatgaacctggctcagcaaagcgggagcaacctcacgctc
gatctcaaccattctccttcatctacagcaacaggtatcaacccaacagcacacatgctc
gctgcattgacttcaccaacttcaatgtacaaccaatcaatgatgcatccccataactcc
tctccagctggaagccacaaagaaggtcctgaaggttcgaacttgttcatttatcacttg
ccaactcacttcacggaccatgacctgatgcagacattctttacattcgggacgatcgta
tcggcaaaagtttttattgataagcaaactaatctcagcaagtgctttggatttgtgagt
tacgataacccggcgtcggctcagcacgcaatccaggccatgcacggtttccagatcgga
atgaagagacttaaagttcagctgaagcgtcccaagggcgagagcaaagcatattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (56)   
   KEGG ORTHOLOGY (1)   
   RefGene (51)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (4)   
   Pfam (4)   
All databases (69)   

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