KEGG   Ciona intestinalis (yellow sea squirt): 100181558
Entry
100181558         CDS       T01056                                 
Name
(RefSeq) probable ATP-dependent RNA helicase DDX43
  KO
K17043  ATP-dependent RNA helicase DDX43 [EC:3.6.4.13]
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cin03041]
    100181558
Spliceosome [BR:cin03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    100181558
SSDB
Motif
Pfam: DEAD KH_1 Helicase_C KH_2 KhpA-B_KH KH_5 MOEP19 ResIII
Other DBs
NCBI-GeneID: 100181558
NCBI-ProteinID: XP_026690921
Position
7:complement(4618207..4625255)
AA seq 630 aa
MCDCWDEEDEISTPSSRFDYSQSRVPNKVNFGRNQRRNYNRYNDRQNNDKDFAGGSDNLF
DDATTITVDSRDCGKIIGKGGSVIRELEQKSGARIKVCQRDRSETDVPVVISGSQDARNA
AHEMINDLMNLNLNRRQPRERDTGSNEMIKIAIRKNDCGKLIGRGGSTINDIRDKSNTNI
KVCQDDEYNYEVPVEITGTSEDCKLAKKLIQDLLEDRENYKPQNSYNDSGPGMTTDGFID
WDFMNKECERIREERWGKLPPIRKNFYIEDDAVADMSTTQVQIWRKENFDVSIADLTDQN
RDLLNPVLTFEHAFSHYPDILTTIYKQGFTRPSPIQSQLWPLALRGYDVIGIAQTGTGKT
LGFLLPIFIHIDLQPVPREEREGPSAIVLTPTRELALQIEQEIKKYTYHGIRCVCVYGGG
NRQNQIKLVTSGVEIIVATPGRFNDLLGCNVITLNSATFLVLDEADRMLDMGFEPQIMKI
LLDIRPDRQTIMTSATWPPGVRRLGKSYLKDPFHVTVGSLDLAVRVASRGLDVKDVTHVI
NYDFPRNTEEYVHRVGRTGRAGKSGISISFFTRSDWGSAKELIAILEEAEQEVPVEVREM
AERFQKMKERKAADGSAYRSGGQRRGGRRW
NT seq 1893 nt   +upstreamnt  +downstreamnt
atgtgtgactgttgggacgaggaagacgaaatctcgacgccgagttcgcgtttcgattat
tcacaatcacgtgtgccaaacaaagtcaattttggtcgaaatcagagaagaaattacaac
agatataatgatagacaaaataatgataaagattttgctggagggtcggacaatttattc
gatgacgcaacaacgataactgtggattcgagagactgtggaaagattatcggtaaaggg
ggttccgtgattcgagaattggaacaaaaatctggagctagaatcaaagtttgtcagaga
gatagaagtgaaactgacgtcccagttgtaatttctggttctcaagatgcaagaaacgct
gcacatgaaatgataaatgatttgatgaatctaaatttaaacagaagacaaccaagagaa
agagatacaggctcaaatgagatgattaaaatagcaatccgaaaaaacgactgtggaaag
ttaatagggcggggtggatcaaccattaatgatattcgagacaaatcaaatacaaatata
aaggtttgccaagatgatgaatataattatgaagttccggttgaaataactgggacatca
gaggattgtaaacttgcaaagaaacttattcaggatttacttgaagatcgggagaactac
aaaccacaaaatagttacaatgattcaggtcctggcatgacaacagatggttttattgat
tgggattttatgaacaaagaatgtgagcgtatacgtgaagaacgatggggaaaattgccg
cctattcgtaaaaacttctacatagaagatgacgcagttgctgatatgtcaacaactcaa
gtacaaatatggagaaaagagaactttgacgtcagtattgctgacttaacagaccagaat
cgcgatctactaaatccagtgttaacattcgaacatgcgttcagtcactaccctgatatt
ctaaccaccatttataaacaaggcttcacgcgaccttcgccgatacagtcccaactatgg
ccacttgcattgcgagggtatgatgtgattggaatagctcaaactgggactggtaaaaca
cttggcttccttctgcctatcttcattcatattgatcttcaacctgttccccgagaagag
agagaaggtccaagcgccatcgtcctaaccccaacaagggaacttgccttacagattgag
caagagattaagaaatatacctatcatggaataagatgtgtctgtgtatatggtggtggg
aacagacagaaccagattaaactggttacaagcggtgttgagatcatcgtggcaactcct
ggccgattcaatgatttacttggatgtaatgtcatcacactcaacagtgcgacattcctg
gttttagatgaagctgaccgaatgttggacatggggtttgaaccgcagatcatgaaaata
cttctcgatatacgaccggatcgtcaaactattatgacatcagcaacatggccacccggt
gttcgtagactgggaaaatcttatttaaaagatccgttccatgttacagtggggtcactg
gatttagcggtgagagtagcctcacgaggacttgacgttaaagatgtgacgcatgtcatt
aattacgacttccctcgcaacactgaggaatacgtgcatagagttggacgtacaggaagg
gctggtaaatctggaatatccatatctttctttacaaggagtgattggggatcggctaag
gaacttattgctatattggaagaagcagaacaggaggttccagtagaagtacgagagatg
gctgaaaggtttcaaaagatgaaggaacggaaagcagcggatggatctgcttatcgatca
ggaggacaaagaaggggaggaagaagatggtga

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (97)   
   KEGG ORTHOLOGY (1)   
   RefGene (93)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (113)   

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