KEGG   Ciona intestinalis (yellow sea squirt): 100183725
Entry
100183725         CDS       T01056                                 
Name
(RefSeq) exosome complex component RRP46
  KO
K12590  exosome complex component RRP46
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100183725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cin03019]
    100183725
Messenger RNA biogenesis [BR:cin03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     100183725
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 100183725
NCBI-ProteinID: XP_026692269
Ensembl: ENSCING00000005595
Position
10:complement(2585755..2587160)
AA seq 233 aa
MKDDMHEVVEQPPTSKFQCEMNALKNADGSAFYSQGETSVMVAVYGPGDLKETKQEIDKA
LVEVDFRPKLGSPTVNEKYLERFVQGVCENAIMLALHPRTAFAIIVQIMQDQGSLLSCAI
NAVCVALQDAGVSMKHLPVAVTVALRKESESELEDATDVLIINPTIKEESESFSILTFVF
DSVNKNLLCMHSQGPLLPKQHERCLKAAKEATEEVLKFFRDSVTQKVAAGLEL
NT seq 702 nt   +upstreamnt  +downstreamnt
atgaaagatgatatgcatgaggttgtggaacaaccaccaacttctaaatttcaatgcgag
atgaatgcattgaagaatgcagatgggtctgctttctattctcagggtgagacctcggtc
atggtagcagtgtatggtcccggtgacctgaaagaaaccaaacaagaaattgacaaagcg
ttggttgaagtagattttcgcccaaaactcggcagtcctactgtcaatgaaaaatatttg
gagcgttttgtacaaggagtttgtgagaatgctataatgcttgcccttcatccaagaact
gcatttgccataattgtacagattatgcaagaccaaggatcgttactctcctgtgccatt
aatgcagtgtgcgtggcacttcaagatgccggtgtgtccatgaaacatttaccagttgct
gtcactgttgctttaaggaaggaaagcgagagcgagttagaagatgcaacggatgtgctt
attattaacccaacaataaaagaagagtccgaatcattttctatcctcacatttgtattt
gatagtgtcaataagaaccttctttgcatgcactcacagggccctctgctgccgaagcag
cacgaacgttgtttaaaagctgcgaaagaagctactgaagaagttttaaagttttttaga
gactctgtaactcaaaaagtggctgctggattggaactttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (43)   

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