KEGG   Ciona intestinalis (yellow sea squirt): 100185467
Entry
100185467         CDS       T01056                                 
Name
(RefSeq) nuclear pore complex protein Nup88
  KO
K14318  nuclear pore complex protein Nup88
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    100185467
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cin03019]
    100185467
Messenger RNA biogenesis [BR:cin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     100185467
SSDB
Motif
Pfam: Nup88
Other DBs
NCBI-GeneID: 100185467
NCBI-ProteinID: XP_002131376
Position
Unknown
AA seq 726 aa
MLSNRLRSLLSQHKIFQDDETTAELPTEPSHDDRVKQLVYIDGSNLFVWKEARSCILTTN
LRSSLDGKDGIIQVFYCQNAPLFEVNKISFNHTNTHVALVGSRGATVLTLPRRWGKEALY
EGGKPSITCRSFAVAERFFMSNISVQLLQASWYPSTSSQHPHLCILTSDNILRIYNATTD
PQTPVQTHKLNQTTDLNNTPMSASRMSLQSMFSITSRLGETIVSFDFASVMLHTPPHRTH
LRKKPEPVSLQPIYLLQGNGDVLLLLTSLTDNKFSHGMLQGPLIMLPPAEDNYGVDSCSI
LVMESSPTTIVIATTAGKLHHCVALWGTDTNDELSPDSDAESISSYRSTRSNTDLNPPTL
YVYESVELELDLLDEDVPENHHIILHKDTILMTRYHCSTSVGVHSIALPWLKKMDGFIRA
DEDDMNNLAGLSHDDPCIVEHVLCTKPTPSTSPCPIVGITIATDPVFGPTLLCLMADNHC
TTVPLLNTFVPSPPPLMSEGGDTTVTPTPVKRSELSFIDHIKAMLKRDVSQPIIRSGSHH
QPMSERECLQVVTRATQVLRDEYMLKQKLARNAINKRVKLLVDLKEHQIDELQQLEEQKE
MLTDNAEMLANKYEDCKERQEELVGRLEDVVRRIKDRDPVLSKAEHEMSKELKLMKDKLW
QVDNRIKQLKIKQEYQEDKLSSSGKRRSGSSTSVQKEKLKQILLEDGEKIHELIKKLNNM
NSLAGL
NT seq 2181 nt   +upstreamnt  +downstreamnt
atgctgtcgaataggcttcgtagcttgttgtcacaacacaagatatttcaagatgatgaa
accacagcagagttgcccacagaaccatcacatgatgatagagtgaagcaacttgtatat
attgatggcagcaacctgtttgtatggaaggaagcaaggagttgtatattgacaactaat
ctgagatcttcactggatgggaaagatggaataatacaggtattttactgtcaaaacgca
ccattgttcgaagtgaacaaaatatcattcaaccacacaaacacgcacgtggcacttgtt
ggttcgcgcggtgcaactgtgcttacattacctcgtaggtggggtaaggaagctttgtat
gaaggtgggaaaccaagtattacttgcagatcgtttgcagtagccgagcgtttcttcatg
agcaacatctcggtccagctccttcaagcttcctggtatccctccacatcctcccaacat
ccccatctttgcatcctaacttccgataatatcctccgtatatataatgcaaccactgac
ccacaaacccccgttcaaacccataagttgaaccaaacaactgaccttaacaacacccca
atgtcagcgtcaaggatgtcgctgcaatccatgttctcaatcaccagcagacttggtgaa
acaatcgtgtcgtttgactttgcttcagtgatgttacacacccccccgcatagaactcat
cttcgtaagaaacctgaacctgtgtccctacaaccgatatatttactgcagggcaacgga
gatgtgcttcttctgctcacttcactcacagataacaaattcagccacggaatgctccaa
ggtcccttgatcatgctcccaccagcagaggacaactatggtgtagattcgtgttctatc
ctcgtgatggagtcgtcacccaccacgatcgtcatagcaaccactgccggtaagcttcac
cactgtgtggcgctatggggcaccgacacaaacgatgaactttcaccagattcagatgca
gaatcaatatcctcgtaccgaagcacacgtagcaacaccgatctgaacccaccaactctt
tatgtttacgaatcggttgaactcgagttggatcttttagatgaagacgttcctgagaat
catcacattattttacataaagacacaatattaatgacccgctatcactgctccacctcc
gttggcgtgcactctatcgccctcccatggttgaagaagatggatgggttcatacgagcc
gatgaagacgacatgaacaaccttgctggtctctcacatgatgatccatgtatagttgaa
cacgtcctctgcaccaaacccaccccatccacctcaccctgccccatagttggcatcacc
atcgctaccgaccctgtgtttggaccaaccctgttatgtttgatggctgacaaccattgc
acaactgtgcccctgctcaacacattcgtaccttcacccccacccctgatgtctgaaggt
ggtgacaccactgtaacaccaacccctgtgaagcgaagtgagttgagtttcattgaccat
atcaaagcaatgttgaaacgtgatgtatcgcaacctatcatcagatcaggaagtcaccat
caacccatgagtgagcgtgagtgcctccaagtggtgacacgagctacacaagtattacgt
gacgaatatatgttgaaacaaaagttggcacgaaacgcgatcaacaaacgtgtcaaacta
ttggtggatcttaaagaacatcagattgatgaacttcaacaattagaggagcagaaagaa
atgctgacggacaacgctgagatgctggcaaacaaatacgaggattgtaaagaaagacaa
gaggagttggttgggaggttggaggatgttgtgaggaggatcaaggatcgggatcccgtg
ttgtccaaggctgaacatgaaatgagcaaagaactcaaattgatgaaggacaagttatgg
caggttgacaatcgtatcaaacaactgaagattaaacaagaataccaggaagataaatta
tcctccagtggtaaacgaagatcaggttcctctacatcagttcagaaggagaaacttaaa
caaatattgttggaggatggagaaaaaatccatgaattgataaagaagcttaacaacatg
aattcacttgctggtttatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (66)   
   KEGG ORTHOLOGY (1)   
   RefGene (62)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (75)   

Download RDF
DBGET integrated database retrieval system