KEGG   Ciona intestinalis (yellow sea squirt): 100185806
Entry
100185806         CDS       T01056                                 
Name
(RefSeq) DNA mismatch repair protein Msh6
  KO
K08737  DNA mismatch repair protein MSH6
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    100185806
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cin03400]
    100185806
DNA repair and recombination proteins [BR:cin03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     100185806
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I PWWP MutS_II MutS_IV MUM1-like_PWWP
Other DBs
NCBI-GeneID: 100185806
NCBI-ProteinID: XP_002126574
Ensembl: ENSCING00000004304
Position
3:complement(4355655..4367508)
AA seq 1307 aa
MPKNLFNYFVKSPSAKQKKHENVKTDNCPSVKPLHESNKSASPSTTNKKAKSKQQQSEFE
EGAIVWAQVEGYPWWPAIVCKHPALLCHTKKKRDVVSEVHVQFYEDVPSRAWVKAHQAKK
YNGSTTPMFRSGGMFHSNDPGVIKAVAIADKALKDTREERLKCVLDIPSDEDEQMDDHEA
DDENTEKDAGGSDDARHKSRDKKRRRIMEESDFSDEDGDFKPPPDVEGDEEDDESSGVDE
STLSDQEEEEPVEIGKKRKRSPLPVKTPSTPLTPRTPMTPRNPMTPRTPASVSKETKSKL
SLFQADPDSSVMEEKQKYLHETLDFLHPSKIKDTQGRKPDDPLYDKSSLKIPNDFMTKLT
PAMHQWWKLKSTNFNVVLFFKVGKFYELYHMDAVVGVKELGLTYMKGNFAHSGFPEVAFG
RYADTLVQKGYTVARVEQTETPEQNQQRIRGKSLPKHEKTLRREICRVTTKGTQVHNMWQ
GGSKHHESDFLLSISERVVNRNESSGSVCREFGVCFVDTTVGVFHLGQFTDDRHCSRLCT
MLAHHSPSQVLFERGKLSNELNKILRTGLSSILQNPLVPGSQFWDAPKTLKTLLNEKYFV
KENDNVWPPTLKCMLSDTDALGLSPKLGYELALSALGACVYYLKKCLIDYEILSMRQFHI
YNATVEKTADVKVKDNFATGNEKMILDSVTLSNLEIIYNSKGEREGTLLERLDNCRTPFG
KRLLKQWLCLPPCNPDVINDRLDAVDDIMSNNDLLSPLFSSMRKMPDLERMLSNIHSLSK
GARKEDHPENRAIFYEETKYSKKKIEDFISVLDNYEAAFVSIKKMQGSVASFKSSLLKSV
LGLTSGISEGKFPDLGSTLKQWKNAFNQKKAKETGKITPNAGTNPEYDGAMEDINRINDD
LERYLNEQKKKLSCSRIIYKGTGNKRYQLELPADVASRKLPNDYVISGQRKGFKSFRTPK
VDCLLKEMEDAETRRDTAQADTMSIVFREFDKDFEMWNTAVSCLALLDVLSSFAEYSKGD
KDEMSRPIILPPSSQHQPLLEIRSARHPCITKIIFSDDFIPNDTILGCGDEGEDHPMCLL
LTGPNMGGKSTLMRQVGLVVILAQLGCYVPAESCRMTPCDRIFTRLGASDRIMTGESTFY
VELSETYSILKHATKNSLVLLDELGRGTATYDGTSIAYAVLDNIANHVGCRTIFSTHYHT
LVEDLAHSKHVKLGHMSCMVEHDDVDGDVDKETLTFLYKLADGACPKSYGFHAALLADIP
ESVVTIARRKAKEMEENNKNLSLFRSLFSQTNINSSFISSKQQEIKC
NT seq 3924 nt   +upstreamnt  +downstreamnt
atgccaaagaatctgtttaactatttcgtgaaatcaccgtctgcaaaacaaaagaaacac
gaaaatgtgaaaacagataattgtccttcggtcaaaccgctccatgaaagcaataaatcg
gcaagcccgtctaccacaaataaaaaagccaaatccaaacagcaacaatcagaatttgag
gaaggtgctattgtatgggcgcaagtagaaggctatccatggtggccagctattgtttgc
aaacacccagcattgttatgtcatacaaagaagaaacgtgacgttgtttctgaagttcac
gttcaattttacgaagacgttccttctcgtgcgtgggtgaaagctcatcaagcaaagaaa
tataatggttccactaccccgatgtttagaagtggtggtatgtttcattctaatgaccct
ggtgtgattaaagctgtcgcgattgcagacaaagcattgaaagacacacgagaagaaaga
ttgaaatgtgttcttgatattccttctgatgaagatgaacaaatggatgatcatgaagct
gatgatgaaaatacagaaaaagatgctggaggttctgatgatgcacgtcataagagtcgt
gataagaagaggagaagaataatggaggaatcggatttttcagatgaagatggtgatttc
aaacctcctccggatgttgagggggatgaggaagatgacgagagcagtggagtggatgag
agtacgttgtcagatcaagaagaagaagaaccggttgaaattggaaaaaagcggaaacga
tctcctttacctgtgaaaaccccaagtacacccctgacccctcgtacccctatgacccca
cgtaaccccatgaccccacgaacccctgcgtctgtgtcaaaggagacaaaatcgaaatta
tcgttatttcaagcagaccctgattcttcagtgatggaggaaaaacagaaataccttcat
gaaacgctcgactttctgcatccaagtaagataaaggacacacaagggagaaaaccagat
gatccactttatgataaatcttcacttaaaattccgaatgatttcatgaccaaactgacc
cctgcaatgcaccaatggtggaaattaaaatcgacaaattttaatgtcgtacttttcttc
aaggttggaaaattctacgagctataccacatggatgcagtggtcggtgtgaaagaactc
ggacttacttatatgaaaggaaattttgctcattccggtttcccagaagttgcgtttggt
cgttacgccgacacacttgtgcagaagggatacacggtcgctcgagtggaacaaacggaa
accccagaacaaaaccagcaaagaatcagaggaaaatcgcttccgaaacacgagaaaact
ttaagaagagaaatctgtcgagtaacgactaaaggcacccaggtgcacaacatgtggcag
gggggaagtaaacaccacgaaagtgactttctcctctccatctccgagcgtgtagtgaat
cgtaacgaaagttccggcagtgtttgtcgagaatttggagtttgttttgttgatacgact
gttggagtatttcacctcggccaattcactgacgacagacattgttcgagactttgtaca
atgttggcccaccattccccatcacaggttttgtttgagcgtggcaaactttcaaacgag
ttgaacaaaatattacgaactggtttgtcgtcaattttacaaaatccacttgtacctggt
agtcagttttgggatgctccaaaaactttaaaaacacttttgaatgaaaagtattttgtg
aaggaaaatgacaatgtgtggccgcccacattgaaatgtatgttgtcagacactgatgct
ttgggtctaagtcccaaacttggatatgagttggctctcagtgcattgggcgcttgtgtt
tattatctaaagaaatgtctcattgattatgagatcttatcgatgagacaattccatatt
tataacgcaacagtagagaagacagctgacgtcaaagttaaggacaactttgcaactgga
aatgagaaaatgatattggacagcgtcactttgtcaaatttggaaattatttataacagc
aaaggcgaacgtgaagggacattgttagagcgtttggataactgccgaacaccatttggg
aaacgattgttaaagcaatggttgtgtcttccaccttgcaaccctgatgtaattaacgac
agacttgatgctgttgatgacattatgagcaacaatgatcttctttctccattgttttcc
tccatgaggaagatgccggacttggagaggatgctttccaacatccactctttatccaaa
ggagcaaggaaagaagatcatccagaaaacagggcgatattctatgaagagacaaaatac
agtaagaagaaaattgaagattttatttctgtgttggataattatgaagctgcgtttgtt
tctatcaagaaaatgcaggggagtgttgccagctttaaatcatctctactgaaaagtgtt
cttggtttaactagtggaatatctgagggaaagttcccagatctcgggtcaacactgaag
caatggaagaatgcgtttaatcagaagaaagcaaaagaaacaggcaaaatcaccccaaat
gctggcaccaacccagaatacgacggagctatggaagatattaaccgcatcaatgatgat
ctggagaggtatttgaatgagcagaagaagaagttatcttgctctaggatcatttataaa
gggacagggaacaaaagataccaactagaacttccagctgatgttgcatccagaaaactt
ccaaacgattacgtgatcagcgggcaacgaaaaggatttaaaagtttccgaactcctaaa
gttgattgtttgttgaaagaaatggaggatgctgaaacaaggagagatactgctcaggca
gacacaatgtccattgtatttcgagaatttgacaaagattttgaaatgtggaacacagct
gtgtcttgccttgcgttgctggatgttttatcgagttttgctgagtatagcaaaggtgac
aaagatgaaatgagtcgtccgataattcttcctccatcctcccaacatcaacccctcctt
gagatcagatccgctcgtcacccctgcatcaccaagatcatcttcagtgatgatttcatc
cctaacgacacgatcctgggatgcggggatgagggagaggatcatccgatgtgtctcctc
ctcactggacctaacatgggaggaaaatcaactttaatgagacaggttggtttggttgtt
attctcgcacaacttggatgttacgttcctgctgagtcatgcaggatgacaccatgtgat
cggatatttacacgactcggcgcttctgacagaataatgactggtgaaagtacgttctat
gttgaactgagtgaaacatacagtattcttaaacatgcaacgaagaattcccttgtatta
ttggatgagctgggtcgaggtactgccacttatgatggaacatccattgcttacgctgtg
cttgataacatcgctaaccatgttgggtgtcggacaatattctctactcactatcacacc
ctagtggaagatttagcgcacagtaaacatgtgaaactggggcacatgtcatgcatggtc
gaacacgatgacgtcgatggtgatgtcgacaaagagacattgacattcttgtacaagttg
gcggacggggcgtgcccgaaaagttatggcttccatgctgctttactcgctgatattcca
gaatctgttgtcacaatcgcgcgacgcaaagcaaaagaaatggaggaaaataacaaaaac
ctttctctgttcaggagtttattttctcaaaccaacatcaattcaagtttcatttcatcc
aaacaacaggaaataaaatgttaa

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