KEGG   Ciona intestinalis (yellow sea squirt): 778936
Entry
778936            CDS       T01056                                 
Symbol
swi/snf
Name
(RefSeq) SWI/SNF protein
  KO
K11654  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    778936 (swi/snf)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cin03021]
    778936 (swi/snf)
   03036 Chromosome and associated proteins [BR:cin03036]
    778936 (swi/snf)
Transcription machinery [BR:cin03021]
 Eukaryotic type
  RNA polymerase I system
   Other transcription-related factors
    NoRC (nucleolar remodeling complex)
     778936 (swi/snf)
Chromosome and associated proteins [BR:cin03036]
 Eukaryotic type
  Chromatin remodeling factors
   CHRAC complex
    778936 (swi/snf)
   RSF complex
    778936 (swi/snf)
   WICH complex
    778936 (swi/snf)
   B-WICH complex
    778936 (swi/snf)
   NORC complex
    778936 (swi/snf)
   BRF complex
    778936 (swi/snf)
   NuRF complex (fruit fly)
    778936 (swi/snf)
SSDB
Motif
Pfam: SNF2-rel_dom SLIDE Helicase_C HAND ResIII HDA2-3 DEAD DBINO Myb_DNA-binding ERCC3_RAD25_C SWI2_SNF2
Other DBs
NCBI-GeneID: 778936
NCBI-ProteinID: NP_001071967
Ensembl: ENSCING00000004110
UniProt: Q4H2Q8
AA seq 1003 aa
MSGTASDTGALSNHSGSENEEEKTPPPKSGYAEKMQQDHGKRFEFLLKQTEIFAHFMNPT
VKTKSPTSPLKMRGRPRLCSKEEPSASTAAADHRHRRTEQDEDEELLSDARKSQGAITRF
EKSPHYVKNGEMRDYQIRGLNWMISLYENGISGILADEMGLGKTLQTISLLGYLKHYRSI
PGPHMVIVPKSTISNWVNEFERWCPSIRTVCLIGSKDQRATIIRDVMMPGEWDVCITSYE
VIIIEKACFKKFNWRYVVIDEAHRIKNEKSKLSTIVRQFRSTNRLLLTGTPLQNNLHELW
ALLNFLLPDVFNSSEDFDSWFNANNLEDDKGLVTRLHGVLRPFLLRRLKSDVEHSLLPKK
ETKIYTGLSKMQREWYTKILVKDIDIINAAGRTDRVRLLNILMQLRKCCNHPYLFDGAEP
GPPYTTSEHLVVNSGKLSVLDKLLPKFQEQGDRVLIFSQMTRILDILEDYCMWRGYNYCR
LDGQTPHEDRQRQINEFNRPGSEKFIFMLSTRAGGLGINLMTANIVILFDSDWNPQVDMQ
AMDRAHRIGQKKQVMVFRLITENTVEERIIERAEMKLHLDNIVIQQGRLVDQSQKLGKDE
MLNMIRHGANHVFASKESEITDEDINAIIAHGEARTNEMKQRLHKLGEGALRKFTLDEGE
SAYSVYKFEGQDWKGKQAEGGLLPWIEPPKRERKANYAVDQYFREALRVSEPKAPKAPRP
PKQPSVQDFQFFPPRLFELLEKEIFCFRKSIGYKVPSDAVEVQEQQRLVDEAEPLAEEEL
VEKEQLLTQGFTGWNKRDFNQFIKANEKFGRDDIESISKEVEGKTPAEVIEYSAVFWERC
NELQDIERIMAQIERGEARIQRKISIKKALDAKIARYRAPFHQLRIQYGTNKGKNYTEEE
DRFLICMLHKLGLERESAYDELRAGVRQAPQFRFDWFIKSRTSMELQRRCNTLITLIERE
NQELEERDKYNPLIKKKGRNDVTHHKRKAEENTDGKVKKKKDH
NT seq 3012 nt   +upstreamnt  +downstreamnt
atgtctggcacggcttccgacactggagctctctccaatcactctggtagcgagaatgaa
gaagagaaaacacctcccccaaaatctggatatgctgaaaaaatgcaacaagaccatggc
aaaaggtttgagttcctgctgaaacagaccgagattttcgctcactttatgaaccccacc
gttaaaaccaaatcccccacaagcccccttaagatgagaggaagaccacgactttgctcc
aaggaggaaccttcggcaagcactgctgctgctgaccaccgacaccgtcgtaccgagcaa
gacgaagacgaggaattattatcggacgctcgaaagtcacaaggagccatcacgaggttc
gagaagtcaccgcattatgtcaagaatggggaaatgagagattatcagatccgtggtcta
aactggatgatatctttgtatgagaatggtattagtggaatacttgctgatgagatgggt
ttagggaagacgttacaaacaatatcattgcttggctacttgaaacattaccgtagcata
cctggcccccacatggttattgtaccaaagtccactatatcgaactgggtgaatgagttt
gaacgttggtgtccttcgataaggactgtgtgtcttattggatccaaggatcaaagggcg
accatcatacgcgacgtaatgatgccgggcgaatgggacgtatgcatcacctcatatgaa
gtgatcattatagagaaggcttgcttcaagaagtttaactggagatacgttgttattgat
gaagctcacaggatcaagaatgaaaagtcaaagttatccacgattgtccgacaattccgt
agcacaaaccgattgttgttaacgggaacccccctacaaaacaacctccatgaattgtgg
gcgttactaaacttcttgctgcctgatgtcttcaattcatctgaggattttgactcgtgg
ttcaacgcgaacaaccttgaagatgacaaaggacttgttacaagactgcatggggtactt
cgtccgttcttacttcgaagattgaagagcgatgtcgaacatagtttacttcccaagaaa
gaaaccaagatttacaccgggcttagtaagatgcaacgagaatggtacaccaagatcctg
gtaaaggacatcgacatcatcaacgcagctggtcgtaccgaccgtgttcgtctcctcaat
atattgatgcaacttcgcaaatgttgcaaccatccatatttgtttgatggagcggaacct
ggtccaccttacaccactagtgaacatctggtggtcaacagtggaaagctatcagtgttg
gataaactgctgcctaagttccaggaacaaggcgaccgggttcttatcttcagtcagatg
actcgtatattggatatactggaggattactgcatgtggaggggttataattattgcagg
ttggatgggcagacaccgcacgaggatagacaacgccagattaatgagttcaacagacca
gggagtgaaaagtttatcttcatgctttccacacgagctggtggtttaggaatcaatcta
atgacggcaaatattgtgattttgttcgatagtgattggaatccacaagttgatatgcaa
gcaatggaccgagcccatagaatcgggcagaagaaacaagttatggtgttccgacttatc
actgaaaatactgtggaggaaagaattattgaacgggctgaaatgaaacttcatcttgat
aacattgttatacaacaagggcgcttggttgatcagagtcagaaacttggcaaggatgaa
atgttaaacatgatacgacacggggcgaaccatgtatttgcttccaaggaaagtgagata
accgacgaggatattaatgctattattgcccatggggaagctaggacaaacgagatgaaa
cagcgactccataaacttggcgagggagcgctacgtaagttcacactagatgaaggggag
agtgcttactcagtgtataagtttgaggggcaagattggaaggggaagcaagctgagggt
gggttacttccatggatcgaaccccctaaacgtgaacgcaaagccaactacgccgtcgac
caatattttcgagaagctttgagggttagtgaacccaaggccccaaaggcaccccgccca
cccaagcaaccatccgtccaagactttcaattcttcccaccaagattgttcgaattatta
gaaaaagaaattttctgtttccggaaatccattggttacaaagtgcccagtgatgccgta
gaggtccaggagcaacagaggttggtcgacgaagctgaaccattggcggaagaggaattg
gttgagaaggaacaattattaacacagggcttcactgggtggaataaacgggatttcaat
caatttattaaagctaatgaaaagtttggaagggatgatattgagagtatttctaaagag
gttgaagggaaaacccccgcagaggtcattgaatattcagcagtgttctgggagcgatgt
aatgaactgcaagacatcgaacgtataatggcacaaatagaaagaggggaggcaagaata
caaaggaagattagcattaagaaggcattggatgcaaagattgcacgataccgagcccca
ttccaccaactgagaatccagtacggcaccaacaaagggaagaattacaccgaggaagaa
gataggttccttatatgcatgctgcataagttgggacttgagagggaatctgcatatgat
gagttacgtgctggtgtacggcaagctcctcagtttaggtttgactggtttataaagtca
agaacatcaatggagctacagcgacgttgcaacacccttataaccctcattgaacgtgag
aaccaagaacttgaggagagagacaaatacaatcctcttataaagaagaaggggaggaat
gatgtgacgcatcataaacgaaaagctgaggaaaatacggacgggaaggttaagaagaag
aaggaccattga

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