KEGG   Citrus sinensis (Valencia orange): 102622684
Entry
102622684         CDS       T02983                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102622684
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cit03041]
    102622684
Enzymes [BR:cit01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     102622684
Spliceosome [BR:cit03041]
 Complex C
  Other components
   Step II factors
    102622684
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_N AAA_22 HA2_C DEAD AAA_19 AAA_30 AAA_16 ABC_tran nSTAND3 SLFN-g3_helicase T2SSE ATPase_2 NB-ARC AAA_29 nSTAND1 DAP3 FtsK_SpoIIIE AAA_33 Helicase_RecD AAA_18 MMR_HSR1 NACHT
Other DBs
NCBI-GeneID: 102622684
NCBI-ProteinID: XP_006484063
Position
4:join(25511725..25511924,25512204..25512296,25512399..25512503,25512784..25513001,25513603..25513655,25513769..25513885,25514996..25515087,25515792..25515878,25515998..25516212,25516577..25516669,25517201..25517324,25517704..25517851,25518426..25518495,25519163..25519323,25519622..25519797,25519947..25520109)
AA seq 704 aa
MANLPILQYEEKIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV
AAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSV
IILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGK
LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIQSL
DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY
VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPE
IQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIG
RTMAELPLEPSLSRMLMEANEYGCLSQALTVAAMLSAETTLLPGRSKSTEKKRKHTPLEL
PDGSGWGDHIQLLQIYECWDECDYDVNWVKDNGLQVRGMMFVKDIRKQLCQIMQKIAKGS
LDVRANHRWKESRQDYRKLRKALCVGYANQLAERMIHHNGYRTLGFKPQLVQVHPSSELK
TDEEGLLPNYVVYHELIATSRPYMRNVCAVEMQWVMPILKKLEKIDINKLSGGAGQMEEA
SEKKLTDMPETEVNAAVVANDHKSRIQAARERFLARKPNKLSKI
NT seq 2115 nt   +upstreamnt  +downstreamnt
atggcgaatcttccgattctccaatatgaagaaaagatagtagaaacggtggagcagaat
ccagtggtggtggttatcggagagacggggtccggcaagagcacgcagctctctcagata
ctccaccgacatggctacaccaaatccggaattattggcgttactcagcctcgccgagtc
gctgccgtatccgttgccagacgagttgcacaggaacttggtgttcggcttggggaggaa
gtaggttatgcaatacgatttgaggatagaacatcggaaagaacacttattaaatacctt
actgatggagttcttcttcgagaaattctgtctaatccagatcttagtccgtattcagtt
atcatattagatgaagcccatgagaggagtctcaacacggacatattgctgggtcttgtg
aaacgcttggttaatttgcgagcatcaaaattaaagattttgatcacgtcagcaactctt
gatggtgaaaaagtttccaagttcttttcaaattgccccacattgaatgtccctggaaag
ttgtatcctgtggagatattgcacagcaaggagcgtcctacaagctatcttgagtctgct
ttgaaaacagcaattgatatacatgttcgagaaccagaaggtgacgtgttgatattcatg
actggacaggatgatatagagaagctagtttcaaagttagaagataaaattcaaagcctg
gatgaagggtcctgcatggatgctgtaatccttccccttcatggttccttgccacccgaa
atgcaggtgcgtgtatttagtcctccacctccaaattgtaggcgatttattgtttccaca
aacatcgctgaaacttccttgaccgttgatggtgtagtgtatgttattgattgtggttac
gtgaagcagcggcaatacaacccatcgtcaggcatgtattcccttgatgtagttcaaatt
agcaaagtgcaagctaatcagcgtgttggacgagctggaaggacgcgccctggaaagtgc
taccggttgtacccatccactgtttaccacgatgaatttcttgatgtaacagtacctgaa
atacagcgatcttctctcgccggcagtgttctttatctgaaatcattggacctctctgat
attaatgttctcaagtttgattttctcgatcccccttcctctgagtcgttagaagatgca
ctaaagcaattatatctgattgatgctattgatgaaaatggatccattacaagtattgga
agaacaatggctgagcttccattagaaccttcactttcacggatgttaatggaggcaaat
gagtatggttgcttatctcaggctttgactgtagctgccatgttatcagcagagaccaca
ttgcttcctggtcgaagcaagagtactgagaaaaagcggaagcacactcccttggaactt
cctgatggttctggttggggtgatcacattcagttgctacagatttacgagtgttgggat
gaatgtgattatgatgtcaattgggtcaaggataatggcctgcaggtgcgaggaatgatg
tttgtcaaagacattcggaaacagctatgtcagataatgcagaaaatagctaagggatca
ttagatgtacgagccaatcatagatggaaagaaagccgacaggattataggaaattgagg
aaggctttatgtgtaggatatgcaaaccagcttgctgaaagaatgattcatcacaacggc
tatcgaactctaggttttaagcctcaactggttcaggtacacccatcatctgagcttaaa
acagatgaagaaggactgctcccgaattatgttgtttaccatgagctcattgctacctct
cgtccatatatgcgcaatgtgtgtgctgtggagatgcaatgggtcatgcccattttaaag
aagcttgaaaaaatagatattaacaaactgagcggtggagctggtcagatggaagaggca
tctgagaaaaaactcacagatatgccagaaacagaggtcaatgctgctgtggttgctaat
gatcacaaaagtagaattcaggcagccagggagcgttttcttgctcgaaaaccaaataaa
ttaagtaaaatataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (24)   
   Pfam (24)   
All databases (51)   

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