KEGG   Citrus sinensis (Valencia orange): 102623596
Entry
102623596         CDS       T02983                                 
Name
(RefSeq) DNA damage-binding protein 1a isoform X1
  KO
K10610  DNA damage-binding protein 1
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03420  Nucleotide excision repair
cit04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    102623596
  09124 Replication and repair
   03420 Nucleotide excision repair
    102623596
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cit04121]
    102623596
   03400 DNA repair and recombination proteins [BR:cit03400]
    102623596
Ubiquitin system [BR:cit04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     102623596
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      102623596
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      102623596
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd Beta-prop_RSE1_1st CPSF_A
Other DBs
NCBI-GeneID: 102623596
NCBI-ProteinID: XP_015382568
UniProt: A0A067G6X3
Position
2:complement(join(28191001..28191582,28191744..28192028,28192139..28192487,28192907..28193181,28193449..28193724,28194183..28194293,28195029..28195244,28195391..28195591,28196394..28196502,28196668..28196774,28196895..28197104,28197728..28197803,28198323..28198372,28198488..28198550,28198696..28198747,28199150..28199241,28199337..28199396,28199557..28199605,28200225..28200328))
AA seq 1088 aa
MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG
RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVL
YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYC
SANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGET
SIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS
FISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELR
NEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPI
GENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL
GDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICH
QEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDS
NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN
QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA
IEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLG
EFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVI
KGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKR
VEELTRLH
NT seq 3267 nt   +upstreamnt  +downstreamnt
atgagtatatggaactacgtcgttacggctcacaagccgacaaacgttactcactcttgc
gtcggcaatttcaccagcccgcaagaactcaatctcatcattgcgaaatgtacacgtatc
gaaatacatttgcttactcctcagggactacagcctatgttggatgtaccgatatatgga
agaattgcaacgcttgaacttttccgccctcatggtgaagcacaggattttctatttatt
gcaacagaaagatacaaattctgtgttcttcagtgggatgcggagtcatctgagctcatt
acaagagctatgggggatgtctctgaccgtataggccgtccaacagataatggtcagatc
ggaataattgatcctgattgcagattaattggactccatttgtatgatgggttgtttaag
gtcattccttttgacaataaaggccagctcaaagaagcatttaacattaggctggaggaa
cttcaagttctggatattaagtttctctatggttgtgcaaaaccaacaatcgtagtgctc
taccaggataacaaagatgctcggcacgttaaaacatatgaagttgccctgaaggataaa
gattttgttgaggggccttggtctcagaataatctggacaatggggctgatttgctcata
ccagtacccccacctctctgtggcgtccttataattggagaagagacaattgtctattgt
agtgccaatgcttttaaagcaatcccaatcagaccttctatcacgaaagcctatgggaga
gttgatgctgatggttctagatatttactcggtgatcatgctgggcttcttcacctcctc
gtcataacccatgagaaagaaaaggttactggactcaaaattgagcttttgggcgaaact
tctattgcatctactatatcatatctggataatgcggttgtgtatattggctcaagctat
ggagattcacagcttataaaactaaatctacaacccgatgcaaaaggttcatatgttgaa
gttttggaaagatatgtcaatttggggccaattgtcgacttctgtgtggttgaccttgag
aggcaaggccaaggtcaggttgtaacctgctctggagcttacaaggatggttctctccgt
atagttcgaaatggaattggaattaatgagcaggcatcagtggaattgcaaggtattaaa
ggaatgtggtcactaagatcatctacagatgatccatttgataccttcttggtggttagt
tttatcagcgagacacgaattttggcaatgaatcttgaggatgagcttgaagaaactgag
atagagggtttctgttctcaaacgcagactttgttttgccatgatgctatctacaatcaa
cttgtgcaagtaacttcaggctctgtaagacttgtcagttctacatccagggagctgcga
aatgaatggaaatctccgcccggttattcagttaatgttgcaactgcaaatgctagccag
gttttactagcaactggcggtggacatttagtttatctagaaattggtgacggaatattg
acagaagtaaagcatgcacagctggagtacgagatttcatgccttgacattaatcccatt
ggtgaaaatcctagctatagtcagatagctgcagttggaatgtggacagatattagtgtt
aggatattttcactccctgacctgaatctcatcactaaggagcatttgggaggagaaatc
atacctcggtcggttcttctttgtgcctttgaagggatttcttacttgttatgtgcactt
ggggatggccatctcttaaactttctattgaacatgaaaaccggtgagttgacagatagg
aagaaggtttctcttgggacccagcccataactctccgtaccttctcatccaagaatacc
acacatgtattcgctgcatctgataggccaactgtaatttatagcagtaacaagaagctg
ctttatagtaatgtaaatttgaaagaagttagtcatatgtgccctttcaactctgctgct
tttccagacagccttgcaattgcaaaagaaggcgagcttactattggcacaattgatgac
atccagaagcttcacatccgctctataccacttggggagcatccacggcgtatctgccat
caggaacagtcccggacttttgccatctgtagtttgaaaaaccagtcatgtgcagaagaa
tctgaaatgcactttgttcgtttgttagatgaccaaacatttgagttcatatcaacttac
ccacttgacacttttgagtatggctgctccatactcagttgttctttctctgatgatagt
aacgtttactactgtgttggtactgcatatgttctaccagaagaaaatgagccaacaaag
ggcaggatattggtttttattgtggaagatggaaaattacaactaattgcagagaaggaa
accaagggagctgtttactctttgaatgccttcaacggcaaattacttgctgccatcaat
caaaaaattcagttgtacaagtggatgctccgggatgatggtacacgtgagctgcaatct
gagtgcggacatcatggtcacatacttgccctctatgtacaaactcgtggagatttcatt
gttgttggtgatctgatgaaatcaatttctctgttgatctataagcatgaggaaggtgct
atcgaagagcgagcccgtgactacaatgcaaattggatgtcagctgttgaaattcttgat
gacgatatctacctaggtgctgaaaacaactttaacctcttcacagtgcggaaaaatagt
gaaggtgccacagatgaggaacgaggtcgtcttgaggtggttggcgaataccaccttgga
gaatttgtcaatcggtttcgccatggatcccttgttatgcgcttgccggactctgatgtg
ggccagatcccaactgtcatttttggaactgttaatggggtcattggggttattgcgtca
cttccacacgagcaatatctattcttagagaagctccagacaaacttgaggaaggtgatc
aagggagttggagggttgaatcatgagcaatggaggtcctttaacaacgagaagaaaact
gtagatgctaagaatttcctggatggtgatttaatagagtcatttcttgatctcagccga
acccgaatggatgagatttctaagacaatgaatgtttctgtggaggagctttgtaagaga
gttgaggaacttacgaggttgcattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (40)   

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