KEGG   Citrus sinensis (Valencia orange): 102624626
Entry
102624626         CDS       T02983                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102624626
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102624626
Enzymes [BR:cit01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     102624626
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     102624626
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C DEAD R3H HA2_C Ank_2 ATPase Ank_5 AAA_22 nSTAND3 AAA_19 HA2_N ResIII T2SSE AAA_7 Ank_3 AAA_16 Rad17 ABC_tran
Other DBs
NCBI-GeneID: 102624626
NCBI-ProteinID: XP_006484996
Position
4:join(18475799..18475958,18476238..18476328,18476506..18476818,18477008..18477082,18477278..18477322,18478165..18478255,18478355..18478413,18478728..18478886,18479238..18479290,18479624..18479657,18479795..18479884,18479991..18480992,18481481..18482575,18482696..18483130)
AA seq 1233 aa
MDQNRAAKMGKKKQKKAEQQQQKQQQQQSPTVAEATRIRISQILDGFLASKDEVYTFDAN
LSNRERAVVHEVCKKMGMTSKSSGRGKQRRVSVCKSKKRVETDKGKEILPSLTFSEGSKL
VLQDLFTHYPPDDGEPGEKLDANQSRKSDKTRGKRVDIFCKPKMSKAEIAMKVESLTSRI
EKDANLRQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSK
GETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLL
RLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRL
ILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPN
EDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGK
GRVGDVCMLLSLGADCQLKARDGRTALQLAEQENQPEVAQIIKKHMENALSDSMKQQLLD
KYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTWDRLLANPFFRDTSK
FVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYD
PYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRAASLPDFQVPEIKRIPIEE
LCLQVKLLDPNCNIEDFLQKTLDPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLS
VHPLMSKMLFFAILMDCLDPALTLACASDYRDPFTLPISPNEKKRATAAKFELASLYGGQ
SDQLAVIAAFECWKNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPEDV
SSCSHNARVPGIIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLSF
KKTDDCPLMVYDEITRGDGGMHVRNCTVVGPLPLLLLATEIAVAPAPDNEDDDEDDDMSD
DDADENESDEDCMEIDDKTSGQHGENVMSSPDKSVTVLVDRWLYFGSTALDIAQIYCLRE
RLSVAILFKVTHPQKALPPVLEASMYAMASILSYDGFSGISLPAESVESLTSMIQATEID
KCPAARNRGTGQNPSNFLMSLMSPNTRQYFPLRDHKSRIPAHKGSTKGNQLSTQVAQPPL
FHGSPVVGSGSGTHIPPGPRGDSFKRPRGNWSK
NT seq 3702 nt   +upstreamnt  +downstreamnt
atggaccaaaacagagcagcaaaaatgggaaagaagaaacagaagaaagctgaacaacaa
caacagaaacaacagcaacagcaaagccctactgttgctgaagctacaaggattcgaata
tcccaaattctcgatggatttcttgcttccaaagatgaagtgtacacgtttgatgctaac
ttatcaaatcgcgagcgggctgtggtgcatgaagtttgcaagaaaatgggcatgacctct
aaaagttccgggcgtgggaagcaacgacgtgtttctgtttgcaaaagtaagaaaagggtg
gagacagataaagggaaggaaattctcccatcattgactttttcagaagggtcaaaactg
gttttgcaggacttgtttacgcactacccacctgatgatggggagcctggtgagaaattg
gatgcaaatcaaagtcggaagtctgataaaacgagagggaaaagagttgatattttctgc
aagcctaaaatgagcaaggcagaaattgcaatgaaggtggaatcacttacttctaggata
gagaaggacgcaaacttgagacagattgttgaagagaggtcaaaacttccaatctcttcc
ttcaaggatgtcattacttccacagttgattcaaaccaggttgtcctcatttctggtgag
acaggttgtggaaagacaacacaggtccctcaatttcttttggagcatatttggagtaag
ggtgagacatgtaaaatagtatgtactcaacctagacgtatctctgcaacttcagttgct
gagagaatatctgttgaaagaggagaaaatatcggagataatattgggtacaagattcgg
ctggaaagtaaaggtgggaagcactcgtcaattgtgttctgcacaaatggggttcttttg
agattgctggtctcccaaggtgttagcaggttgaaggaagcatctaataagccggcaaag
gatgatgtttctgcactaactcacattattgtggatgaaattcatgaaagagatcgctac
tctgatttcatgttggccattatcagagacatgctcccctcatatcctcatcttcggctg
atattaatgagtgctactctggatgctgatagattttctcaatattttggtggatgccca
gtcattcaagtccccgggttcacttatcctgtcaaatctttctatttggaggatgtactt
tccatcctgaaatctgcagagagtaatcaccttgattctgctagcttaattgtcccaaat
gaggaccctgaattaacggaggaaaataagagtactttagatgaagctatcagtttagct
tggtcaaatgatgagtttgatatgctcctagaattggtttctttggaaggatccccaaat
gtttacaactaccagcatactttgactgggctaacaccattaatggtgcttgctggaaag
ggccgagtaggtgatgtttgcatgctcctctctcttggtgcagactgccagctaaaggcc
agagatggaagaacagcgttacagttggctgaacaagaaaatcagccagaagttgctcaa
attattaaaaaacacatggaaaatgcactgtctgactccatgaaacaacaattacttgat
aaatatctagcaacagttaaccctgaacttattgatcttgttcttatagagcagttactt
agaaaaatatgcatggattcggaagatggagctatccttgtttttcttccaggatgggaa
gatataaataaaacctgggatagattgcttgctaacccctttttcagagatacttccaag
tttgttataatacctcttcattctatggttccctctgtgcagcaaaagaaggtgtttaaa
cgcccaccgcctggttgtcggaaaattattctttcaaccaatattgcagaaactgccatc
accattgatgatgttgtctatgttatagacagtggtcgaatgaaagaaaaaagttatgat
ccttacaacaatgtatcaactcttcaatcttcctgggtgtcaaaagcaagtgcaaaacag
agggcgggacgtgcaggccgctgtcaggctggaatctgttatcatctttattctcaactt
cgagcagcttctttgcctgatttccaggtcccagaaattaagagaattccaattgaggaa
ctctgtttacaggtgaagttgcttgatccaaattgtaatattgaagatttcttgcagaag
acattagaccctccagtttctgtaactattcgtaatgcaatcattgtccttcaggatatt
ggggctttgtcacttgatgaaaaagttaccgaacttggggagaagctaggttgtctttct
gttcatccattgatgagcaagatgcttttctttgccatactgatggactgtttagaccca
gctttgacactggcctgtgcttctgactatagggacccattcacccttcccatatcacca
aatgaaaagaagagagctactgctgctaaatttgagcttgcttcattgtacggtgggcag
agtgatcagctcgcagtcatagcagcttttgagtgctggaagaatgcaaaacagaggggt
caagaagcatggttttgttctcagtacttcgtctcctcaggtgtcatgaatatgctgctt
ggtatgcgtaagcagctccagacagagctaattaagaatgggtttattccagaagatgtc
tcgagttgtagtcataatgcacgtgtaccaggtataattcatgcagtcctcatggctggt
ttatatccaatggtagcgaggttgcgtccacctcataaaaatggaagacgatttgtagag
actgcaggtggtgctaaagttagattgcacccccattctcttaatttcaaattatcattt
aaaaaaactgatgattgcccgctaatggtatatgatgagataacccgtggggatgggggt
atgcatgtaaggaattgtactgttgttgggccactgccattgttactccttgcaacagag
attgctgttgctccagcacctgataatgaagatgatgatgaagatgatgacatgagtgat
gacgatgctgatgaaaatgaaagcgatgaggattgtatggagatagatgacaagacaagt
ggacaacatggagagaatgttatgtcatctcctgataaatcagttacagttttggtggac
cgatggctttattttggatcaacagcccttgatattgcccaaatctactgtttaagagag
agattatccgttgcaatcttattcaaagtaacacacccccagaaagctcttcctccagtt
cttgaggcctccatgtacgcaatggcctccattctatcatacgatgggttctctgggatc
tcactgcctgcagaatccgtggaatcattgacttcgatgatacaagcaactgagattgat
aagtgcccagcagcgagaaatagaggtacaggtcagaatccaagtaacttccttatgtca
ctcatgagtcccaatacccggcaatactttcctcttcgtgatcataaaagtaggatacct
gcacacaagggatcaacaaagggaaatcagttatcaacccaagtggctcagccaccgcta
ttccatggctccccggtagttgggtctggttcaggtacgcatatacctccaggccctagg
ggagattcatttaagcggccacgtgggaattggtctaaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (19)   
   Pfam (19)   
All databases (41)   

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