KEGG   Citrus sinensis (Valencia orange): 102624793
Entry
102624793         CDS       T02983                                 
Name
(RefSeq) topless-related protein 1 isoform X1
  KO
K14558  periodic tryptophan protein 2
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    102624793
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cit03009]
    102624793
Ribosome biogenesis [BR:cit03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    102624793
SSDB
Motif
Pfam: WD40 LisH_TPL ANAPC4_WD40 LisH DUF1040 zf_topless Cytochrom_D1 NBCH_WD40
Other DBs
NCBI-GeneID: 102624793
NCBI-ProteinID: XP_006483374
Position
1:join(1684809..1684912,1685012..1685191,1686475..1686588,1686671..1686857,1686993..1687057,1687138..1687317,1687953..1688099,1688182..1688350,1688440..1688475,1688590..1688736,1689408..1689515,1689590..1689760,1689860..1689982,1690145..1690240,1690681..1690872,1690949..1691118,1691194..1691377)
AA seq 790 aa
MHGSKMCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFNVHRFGEIVMNGEWEK
AEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRID
CELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALS
SLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEW
DNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVE
RNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYA
SSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLK
LQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEE
NVNMEPQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLAT
FANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV
LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQI
DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL
TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTDSREF
STTFGSTALE
NT seq 2373 nt   +upstreamnt  +downstreamnt
atgcatggttccaaaatgtgcattgacaaggatacgtacacgcatctcataaccctgata
atgaagtttcttgaagaagaaaatttcaaagaaagtctccaagcattggagcaagagtcg
aagattttcttcaacgtgcatcgttttggggaaattgttatgaatggtgaatgggaaaag
gcggagaagtatctttcagcatttacgaaactggatgatagtaatcattcaaagaaaatg
ttcttcgagctgcgcaagcataagtactgtgaagctttatgcaggcatgaacgtacagag
gctgatagcatcttcaggaaggatctgaaagtgttctctgtttctcaaaatagaatcgat
tgtgaattagctgagcttttggcattaaaggatttaagggaaaatgaacaattatccggg
tatacaaatgccacatcttcaagggccaaattgattgatagtctcaaattattggtcaag
gaaaatcgaatattgcaagataaactcatctttccctgtgtaaataattcagctctctct
tcactcatcaaactcatttgccctagttttgaaaaggaaacaaaggaagaactaatttac
ttgatacatcagtttcttaatgaagaagaattcaaggagacccttcataaattggagcaa
gaaactagggtcttcttcgacataaattattttagggagtatataactagtggagaatgg
gataatgcagagaaatacctctcagcattcaccaacatgaacgataatacgtactctgca
aaaatgttttcccagattcaaaggcagaagtatcttgaagctgtagacaggcaacagaag
cttccatctgattttgctgaaagggctcatttgtttgatgattttaaagtgctagtggag
agaaatcctatgttgcaagacaaactcaaatttcccagtatggataaatcaagactcttg
agcttaattaagcagattatggattggtgggttccttattgcatcaatgtgatgcctaat
gcaaataatgagaccatctcactgaaagattttcccacggtatcaaaccttagatatgct
tcatcaattcttactgataaacccaatcaagaaggcaggcccttggacgcatctagtggt
gatgattctaatgatagcagctgcttcaatgacaataaccagtctagagagagcactagc
ttgcctgatgcagattctgcagtttgtgcaaaatcgttggaaaaatctgttaatttgaag
ctgcaactgatcaatgaaccatctgaatgccgaacattgttgctccctgataattctttt
gggggaagggttgtccggttgatctattcacattctggggatttcttggtggcattaaca
caaactgctacacacaaactctggaaatggcagagtaataaacagtctctggaggaggag
aatgttaacatggaaccgcagttatatcaaccttcaagcaaattagtaatgaccaatgat
atagctgcagatcccaaagattctatttcatgctttgcattgagaggttctcatcttttc
tcagcatcaggagggaaaatctccatattcagtctggagacatttcagacattggcaaca
ttcgccaacccaccacccatagctacatatttcatcttacttccccaagatttgtttgct
tttggctttgatgactcttcaatcctagttcattgtccctgcaccaaaaagacaaaagcc
aagctcaagggccatcaaaatcgaataacatgcctagcatattctctcagtttgaacgtg
cttgtatcctccggagctgatgcccagctgtgtgtatgggatgcagttggatggaagaaa
ctatgcagtaagtttttgcatagttttcagactggtttggtgccagaaaccactattgtg
aatcacattcagtttcatccagatcagattcacctactttcaatccacgaaggacagata
gatgtgtatgaagcacccacactaaatcacacttcccagttggtgcctgacaaaatggat
cttccaatcacatacgccacatattcttgcgatggtaagtgtatatatgttagctgcaaa
agcggacacgtaaaagtttttgatacttcaacactcgagctaaggtgtcagattaatctc
actgcctatgcacaacctggaactatcagtttggagctctatcctcttgtcattgctgct
catccgttggaacccaatcgaatagcgttagggcttactaatggtagagtccatgttatt
gagcccctagaatctgaagtagaatggggaaaactacctttcacagatagcagggagttt
agtactacttttggttccactgctcttgaatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (8)   
   Pfam (8)   
All databases (42)   

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