KEGG   Citrus sinensis (Valencia orange): 102629446
Entry
102629446         CDS       T02983                                 
Name
(RefSeq) transcription initiation factor IIB-2
  KO
K03124  transcription initiation factor TFIIB
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    102629446
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cit03021]
    102629446
Transcription machinery [BR:cit03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     102629446
 Prokaryotic type
  Archaeal type
    TFB
     102629446
SSDB
Motif
Pfam: TFIIB TF_Zn_Ribbon Cyclin_N Ribosomal_S27e zf-ribbon_3 Zn-ribbon_8
Other DBs
NCBI-GeneID: 102629446
NCBI-ProteinID: XP_052289662
Position
9:join(8870481..8870833,8871139..8871163,8872932..8873061,8873154..8873284,8873432..8873520,8874524..8874600,8875336..8875469)
AA seq 312 aa
MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF
DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWY
AKEEDLKNLCSP
NT seq 939 nt   +upstreamnt  +downstreamnt
atgacggacgccttttgctcggactgcaagaagcacacggaggtggtgttcgaccactcg
gcgggggacacggtgtgctcggagtgcggcctcgtgttggagtcgcactccatcgacgag
acctccgagtggcgtaccttcgccaacgaatccggcgacaacgaccccgtccgtgtcggc
ggccccaccaacccgctcctggccgacggcggcctctccaccgtcatcgccaagcctaat
ggagcttccggagaattcttgtcgtcgtcgctcggacgctggcagaatcgcggctcgaat
ccggatcgcggcttgattttggcttttaaaacaattgctaccatgtctgataggttaggc
ctcgttgcaaccattaaggatcgggcaaatgagatatataagaaggtggaagatcaaaag
tctagtagaggcagaaatcaagacgcattattggctgcttgcctgtacattgcttgtcga
caagaagacaagccacgcactgttaaggaaatctgctctgtcgccaatggagctacaaag
aaggaaattggccgagcaaaagaatacattgtgaaacagctgggtttggagactggtcag
tcagtggagatgggaactatacatgctggggactttatgaggcgcttctgttccaatttg
ggtatgaataatcaagctgttaaagctgcccaagaagctgttcagaagtccgaggagttt
gatataaggaggagcccaatatcaattgcagctgcagttatttatattataactcagctt
tcagatgacaagaagccgctcaaagatatttctgttgctactggagttgctgaggggaca
atcagaaattcgtacaaggatctttatcctcatgtctcaaagataataccaaactggtat
gccaaggaagaggatcttaaaaacctttgcagcccgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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