KEGG   Cellvibrio japonicus: CJA_2010
Entry
CJA_2010          CDS       T00721                                 
Name
(GenBank) putative DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
cja  Cellvibrio japonicus
Brite
KEGG Orthology (KO) [BR:cja00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cja03032]
    CJA_2010
   03400 DNA repair and recombination proteins [BR:cja03400]
    CJA_2010
Enzymes [BR:cja01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     CJA_2010
DNA replication proteins [BR:cja03032]
 Prokaryotic type
  DNA Topoisomerases
   CJA_2010
DNA repair and recombination proteins [BR:cja03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      CJA_2010
SSDB
Motif
Pfam: Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom Zn_ribbon_recom DUF2399 Toprim_4 GAGBD
Other DBs
NCBI-ProteinID: ACE84648
UniProt: B3PHK9
Position
complement(2326632..2329253)
AA seq 873 aa
MGKSLVIVESPAKAKTINKYLGSDFVVKSSIGHIRDLPTSGNNKPVDTKERARQAAATRK
MSAEQKAVYQAQKSKSQLVGRMGIDPENHWEAHYEILPGKEKVVDELKKLAEKADAIYLA
TDLDREGEAIAWHLREAIGGDESRFRRVVFNEITKTAIQNAFKSPGPIDQNRVDAQQARR
FLDRVVGYMVSPLLWEKVARGLSAGRVQSVAVRLVVEREREIRAFIPEEYWTLFADLKAE
SGQIASFEVKKQGEEAFKPINEAQAMAAVTALQHAAYKVVSREDKPTQSKPTAPFITSTL
QQSASTRLGFGVKKTMMLAQRLYEAGYITYMRTDSTNLSQEAVESCRTYILDNFGQKYLP
KEPVAYSSKEGAQEAHEAIRPSSVDVMPNQLSAMERDAERLYGLIWQQFVACQMTPAEYT
STSVVVEAGNYELRTRGRVIRFDGYTRVLPQQAKKDEDVVLPDMKVGQVLPLVKLNPQQH
FTKPPARYTEASLVKELEKRAIGRPSTYAAIISTIQERGYVRQENRRFYAEKMGDIVTER
LMESFDDLMDYGFTANMEEALDQVAQGDKNWRQLLDEFYADFSQQLDTASRQDKGMRAND
PTDTNIPCSLCGRHMQIRTGSTGVFLGCSGYALPPKERCKNTMNLVSGHEVIDADADDEA
ESRQLRSKHRCKLCNSAMDSYLIDEQRKLHICGNNPDCPGYEVEQGVYRIKGYEGPTIEC
DKCGSEMQLKTGRFGKYFGCTNADCKNTRKLLKNGEAAPPKVEPIAMPELRCEKVDDHYV
LRDGAAGLFLAASQFPKNRETRAPLVAELLPYKNQLDPKYHFLLSAPVSDPEGNKAIVRF
SRKTKEQYVQTEVNGKATGWKAFYVNGRWQVQK
NT seq 2622 nt   +upstreamnt  +downstreamnt
atgggtaaatccttagttattgttgagtcgcctgcaaaggcaaaaacgattaataaatac
ttgggcagcgactttgtcgttaagtccagtattggccatatccgcgatttgcctaccagt
ggcaataacaaacccgtggataccaaggagcgagccaggcaggcagctgctacgcgcaaa
atgtcggcagaacaaaaggcggtatatcaagcgcaaaagagcaaaagccagttggtaggc
cgaatggggatagacccggaaaaccactgggaggcccactacgaaatactccctggtaag
gaaaaagtggttgatgagctgaagaagcttgctgaaaaggcggacgccatctacctggca
accgacttggatagagagggagaggcaattgcctggcatttgcgcgaggctatcggcggc
gatgaaagccgttttcgccgtgtcgtatttaacgagattaccaagacggctattcaaaat
gcctttaaaagtcctggcccgatagaccagaaccgtgtcgatgcgcaacaggcgcgccgt
ttcctggatcgtgttgtcggctatatggtgtcgccattgctatgggaaaaggttgcccgg
ggcctatctgccgggcgggtacagtctgttgctgtgcgcttggttgtcgaacgcgaacgc
gaaatacgcgcctttattccggaagaatactggaccctgtttgccgacctgaaggccgaa
agtggccaaatcgccagttttgaggtgaaaaagcagggtgaagaggcgttcaagccgatc
aatgaagcccaggcgatggctgctgtcacagcactacagcatgccgcttacaaggtcgtc
agccgcgaagataagcctacccagtcaaaaccgacagcgccctttatcacttcgaccttg
caacaatcggccagtacccgcttagggtttggggtaaagaaaaccatgatgcttgcccag
cgcttatatgaggcgggttacatcacctatatgcgtacagattcaaccaaccttagccag
gaggcggtggaatcctgtcgaacttatatcctggataattttggtcagaaatacctgcca
aaggagcctgtggcttattccagtaaagagggagcgcaggaggctcacgaagctatacgc
ccctccagcgtagatgttatgcccaatcaactttctgctatggagcgcgatgcagagcgg
ctctatggcttgatttggcaacaatttgttgcctgccagatgaccccggccgagtacacc
agtaccagtgtggtagttgaagcaggcaactatgagttgcgtacccgcggtcgcgtgatc
cgctttgacggctatacccgagtgcttccgcagcaggccaaaaaagacgaagacgtggtc
ctgccagacatgaaggtggggcaggtgcttcctttggtgaagctgaacccacagcaacat
ttcaccaaaccgccagcgcgttacaccgaagccagcttggtaaaagaattggaaaagcgt
gcgattggccgcccatcaacctatgcagcgattatttccaccatccaggagcgcggttat
gtacgccaggagaatcgccgtttctatgcggaaaaaatgggtgatattgtcacagagcgc
ctgatggaaagctttgacgacctgatggactacggttttaccgccaatatggaggaagca
cttgatcaggttgcgcagggggataagaactggcgtcagctgctagatgagttctatgcc
gatttcagccagcaattggataccgcatcgcgtcaggataagggcatgcgtgccaacgat
ccaacagataccaatatcccctgcagcctctgcggtcgccatatgcaaatccgcaccgga
agtaccggggttttcctgggatgttcaggttatgccttgccgcccaaggagcgctgcaag
aacaccatgaaccttgtttccggccatgaagtaatagatgccgatgcggatgacgaggcc
gaatcacgtcaattgcgctccaaacatcgctgtaaattgtgtaactcggcaatggactcc
tatctgattgacgagcagcgcaaattgcatatttgcggcaataaccctgattgtcccggt
tatgaggtggagcagggtgtatatcgcatcaagggctacgaaggtcctacgattgagtgc
gataaatgcggtagtgaaatgcagctgaagaccgggcgtttcggcaaatactttggctgc
actaacgctgactgtaaaaacacacgcaagctgctcaagaatggcgaggctgctcccccg
aaagtggagccgatcgctatgccggagttgcgctgtgaaaaggtggatgatcactatgta
ttgcgcgatggcgctgccggtttgttcctggcggccagccaattcccgaaaaatcgcgag
acacgtgcgccacttgtcgctgagttgctgccttacaaaaaccagcttgatcccaagtac
cacttcctgctgtctgcgccggtttccgatccggagggcaataaagccatagtgcgtttc
agtcgcaagacaaaagagcaatatgtgcaaacggaagtgaatggcaaggcgacaggctgg
aaggctttttatgtgaatggccggtggcaggtgcagaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (51)   

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