KEGG   Cellvibrio japonicus: CJA_3478
Entry
CJA_3478          CDS       T00721                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
cja  Cellvibrio japonicus
Pathway
cja03030  DNA replication
cja03410  Base excision repair
cja03420  Nucleotide excision repair
cja03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cja00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CJA_3478
   03410 Base excision repair
    CJA_3478
   03420 Nucleotide excision repair
    CJA_3478
   03440 Homologous recombination
    CJA_3478
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cja03032]
    CJA_3478
   03400 DNA repair and recombination proteins [BR:cja03400]
    CJA_3478
Enzymes [BR:cja01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CJA_3478
DNA replication proteins [BR:cja03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CJA_3478
DNA repair and recombination proteins [BR:cja03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     CJA_3478
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CJA_3478
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH_5 HHH
Other DBs
NCBI-ProteinID: ACE84986
UniProt: B3PG24
Position
complement(4171849..4174662)
AA seq 937 aa
MYPSAFVWAFGPVNYRIYAMTQQTLLSVSSPLVLVDGSSYLYRAYHALPPLTNSKGQPTG
AVKGVVNMLRRLRKDYPQSPIAVVFDAKGKTFRDELFAEYKANRPPMPEDLRPQVQPIHD
IVQAMGLPLLVIEGVEADDVIGTLARQATEQKRDVIISTGDKDMAQLVNEHVTLVNTMTD
SVLDIPGVHAKYGFGPELMIDYLALMGDKVDNIPGVPGVGEKTAQGLIQGIGSLDAIYTD
LEKVRSLSFRGAKTMPEKLIEHRDMAYLSYQLATIKTDVELPMGPEALHNQAADNAKLRV
LFEEMEFKSWIAELSNTESAIEIDSQVDVPTKTAIEKHYDIIFTESEFATWLARLQAATE
FSFDTETTSLDVMEARIVGVSVATEPGVAAYIPCGHDYMGAPEQLSLEWVLNQLKPLLED
EHKIKIGQNIKYDRSVLLNYGITLRGIKYDTMLESYVWNSVASRHNMDDLAQTYLDYKTV
TFEELAGKGVKQLTFNQLKIEDAGHYAAEDADITLRLHQFFWPQLQQQSGLCKVFREIEM
PLVPVLSHIERNGALVDAKLLGQHSIELGERMVQLERKAYELAGQEFNLSSPKQLGVILF
EQLQLPVIKKTPTGTPSTAEEVLQELALDYPLPKVIMEYRAMAKLKSTYTDKLPLMINPA
TGRIHTNYHQAVAATGRLSSQDPNLQNIPIKTDEGRRIRQAFIAPAGYKLVAADYSQIEL
RIMAHLSSDSGLLSAFEKGLDVHRATAAEVFGVALDSVTPEMRRSAKAINFGLIYGMSAF
GLAKQLHVGRNEAQQYIDRYFERYPGVQRYMNNIRAQAHEQGYVETLFGRRLYLPDINAK
NKNFQLAAERTAINAPMQGTAADIIKTAMIAVDNWLVEAGLDAKLIMQVHDELVLEVAES
CLDEVCTGVVARMSAAARLNVPLIVDAGVGNNWDEAH
NT seq 2814 nt   +upstreamnt  +downstreamnt
gtgtatccttcggcctttgtttgggcctttgggccagttaattaccggatttacgccatg
acacaacagacgctcctttccgtttcctctcccctggttttggtcgatggttcttcttat
ctctatcgtgcataccatgcccttcctcccctgacgaactccaaaggccagccgacaggt
gccgtaaagggtgtggtcaatatgttgcggcgcttgcgtaaggattacccgcaaagccct
attgcggtggtatttgatgcaaaggggaaaacgtttcgcgatgaactctttgccgaatac
aaggccaatcgtccaccaatgcccgaggatttgcgtccccaggtgcagccgattcacgac
atagtacaagccatggggttgccgttgttggtgattgaaggggttgaggctgatgatgta
attggcacccttgcccgtcaggcaacagagcaaaagcgtgacgtgatcatttccacgggt
gataaggatatggcgcaattggtgaacgagcatgtgacgctggtgaataccatgacggat
tctgtgctggatattcccggtgtgcatgccaaatacggttttggccccgaattgatgatt
gattatctcgccctcatgggtgacaaggtcgataacatccccggtgttccgggcgttggc
gaaaaaaccgcacaaggattgatacagggaattggcagcctcgatgcgatttataccgat
ttggaaaaagtgcgcagcttgtctttccgcggcgcgaaaaccatgccggaaaaactgatc
gaacatcgcgatatggcctatctttcctaccagctggccacgatcaagacggatgtggaa
ttacccatggggccggaagcattgcacaaccaggccgccgacaatgcaaaattgcgtgtg
ctgtttgaggagatggaattcaaaagctggattgcggagttgtcaaatacagaatctgct
attgaaattgattcgcaggtagatgtgccgacgaaaaccgcgattgaaaaacattacgat
attatttttacagaatcggaatttgcaacctggctggcgcgtttgcaagccgcgacagag
ttttcatttgatacagaaacgaccagtcttgatgttatggaagcgcgtattgtcggtgtc
agtgtggcaacagaaccgggtgttgctgcttatatcccctgtggtcatgattatatgggt
gcgccggagcaactgtccctggaatgggtgttgaaccaactcaagccgctgcttgaagat
gaacataaaatcaaaattggccaaaatattaaatacgatcgcagtgtattgctgaattac
ggtatcaccttgcgcggtattaaatatgacaccatgctggaatcctacgtgtggaattca
gtggctagccgccacaacatggatgatctcgctcagacctatctcgattataaaaccgtt
acgtttgaagagttggcaggcaaaggcgtcaagcaactcacatttaatcaattaaaaatt
gaagatgcaggacactatgcagcagaggatgccgatatcacgctgcgcctgcatcagttc
ttttggccacaactgcaacagcaatcgggtttatgcaaggtgtttcgtgaaattgaaatg
cctttagttccggtgctatcacacattgagcgcaatggtgctttagtcgatgcaaaattg
cttggtcagcacagtattgaattgggcgagcgcatggtacagcttgagcgtaaagcctat
gaactggccgggcaggaatttaacctgagctcacccaaacaattgggggtgattttattt
gagcaattgcaattgccggttatcaagaaaacaccgacagggacaccgtcgacggcagaa
gaagtgctgcaagaattagcactggattatccgctgcctaaagtgattatggagtatcgc
gcaatggcgaaactcaaatcgacttatacggataaactgccgttgatgattaatcctgcc
accggccgtatccataccaattatcaccaggcggtagcggcgaccggtcgtctgtcatcg
caagatcctaatctgcaaaatattcccataaaaaccgatgaagggcgtcgtattcgccag
gcctttattgcgcctgccggatataaattggttgctgcagattattcacaaattgaattg
cgcatcatggcgcatttatcgagtgattctggtttgttgagcgcctttgaaaaagggctg
gatgtgcaccgggctactgccgcagaagtctttggagtagcgctggattcagtaacccct
gaaatgcgtcgtagtgccaaagcgattaactttggtttgatttacggcatgtctgcattt
ggtttggccaaacaactgcatgttggacgcaacgaagcgcaacagtacatcgaccgttat
ttcgagcgctatcccggtgtgcagcgctatatgaataatatccgtgcccaagcccatgag
caggggtatgtggagaccctgttcgggcgccggctctatctgccggatatcaatgccaaa
aacaaaaactttcagttggctgcggagcgcacggcgattaacgcacccatgcagggcacg
gccgctgacattatcaaaacggccatgattgccgtggataactggttggtagaggccggg
ctggatgcaaaactcattatgcaggtgcatgacgagctggtgttggaagtcgcggaatcc
tgcctggatgaggtttgcacaggtgtggttgccaggatgtctgccgcggccaggctaaat
gtccccctgattgttgatgccggtgtggggaataactgggatgaggcacactaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (60)   

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