KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100387589
Entry
100387589         CDS       T03264                                 
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X3
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100387589 (EDC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cjc03019]
    100387589 (EDC4)
Messenger RNA biogenesis [BR:cjc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100387589 (EDC4)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     100387589 (EDC4)
SSDB
Motif
Pfam: Ge1_WD40 EDC4_C WD40 DUF445
Other DBs
NCBI-GeneID: 100387589
NCBI-ProteinID: XP_002807795
Ensembl: ENSCJAG00000015963
UniProt: U3E1X6
Position
20:22044902..22056354
AA seq 1403 aa
MASCASIDIEDATQHLRDILKLDRPAGGPSTESPRPSSAYNGDLNGLLVPDPLCSGDGTS
TNKTGLRTMPPISLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERILLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLALVNGKIQEEILVHIRQPEGTPLNHFRRIIWCPF
IPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSHNTWPVDVSQIKQGFIVVKGHSTCL
SEGALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPDVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQEEGRAYFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGADGTHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHTA
HEDFTFGESRPELGSEGLGSAAHGSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFMT
PSASLQQITACPSSSSSGSSSSSSSSSSSSSLTAVSAMSSTSAVDPSLVRPPEELTLSPK
LQLDGSLAMSNSGSLQASPRGLLPSLLPAPADKLTPKGPGQVPTAASALSLELQEVEPLG
LPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAPEGLEPDSMASAASALHL
LSPRPRPGPELGPQLGLDGGPGDGDRHNTPSLLEAALTQETSTPDGQVWPTAPDITRETC
STLAESPRNGLQEKHKSLSFHRPPYHLLQQRDSQDASAEQSDHDDEVASLASASGGFGTK
VPAPRLPAKDWKTKGSPRASPKLKRKSKKDDGDAAMGSRLTEHQVAEPPEDWPTLIWQQQ
RELAELQHSQEELLQRLCTQLEGLQNTVTGHVERALETRHEQEQRRLERALAEGQQRGGQ
LQEQLTQQLSQALSSAVAGRLERSLRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVE
GSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQIN
DSFRVGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQSATEQMAATVASSVRA
EVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPSAH
LDCQAQQAHILQLLQQGHLNQAFQQALTAADLSLVLYVCETVDPAQVFGQPPCPLSQPVL
LSLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPH
NSLGKAARRLSLMLHGLVTPSLP
NT seq 4212 nt   +upstreamnt  +downstreamnt
atggcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggatatcctc
aagctggaccggcccgcgggcggccccagtacagagagcccacggccatccagtgcctac
aatggggacctcaatgggcttctggtcccagaccccctctgctcaggtgatggtacctca
acaaacaagactggtcttcggaccatgccacccattagcctgcaagagaagcaagtcatc
tgtctctcaggagatgatagctctacctgcattgggattttggctaaggaggtggagatt
gtggctagcagtgactctagcatttcaagcaaggcccggggaagcaacaaggtgaaaatt
cagcctgtcgctaagtatgactgggaacagaagtactactatggcaacctgattgctgtg
tctaactccttcttggcctatgccattcgggctgccaacaatggctccgccatggtgcgg
gtgatcagtgtcagcacttcggagcggatcttgctcaagggcttcacaggcagtgtggct
gatctggctttcgcgcacctcaactctccacagctggcctgcctggatgaggcaggcaac
ctgtttgtgtggcgcttggctctggttaatggcaaaattcaagaagagatcttggtccat
atccggcagccagagggtacgccactgaaccacttccgcaggatcatctggtgtcccttc
attcctgaagagagcgaggactgctgtgaagagagcagcccgacagtggccctgctgcat
gaagaccgggctgaagtgtgggacctggatatgctccgctctagccacaacacctggcct
gtggatgtcagccagatcaagcagggcttcattgtggtaaaaggtcatagcacgtgcctc
agtgaaggagccctctcccctgatgggactgtgctagctactgcgagccatgatggctat
gtcaagttctggcagatctacattgagggacaagatgagccaaggtgtctgcatgagtgg
aagcctcatgatgggcggcccctctcctgcctcctgttctgtgacaaccataagaaacaa
gaccctgatgtccctttctggaggttccttattactggtgctgaccagaaccgggagcta
aagatgtggtgcacagtgtcctggacctgtttgcagactattcgcttctccccagatatc
tttagctcagtgagtgtgccccctagcctcaaggtttgcttggatctctcagcagaatat
ctgattctcagcgatgtgcaacggaaggtcctctatgtgatggagctgctacagaaccag
gaggagggccgtgcctactttagctccatctcagagttcctgctcacccaccctgtgcta
agcttcggtatccaggttgtgagtcgttgccggctgcggcacactgaggtgctgcccgct
gaggaggagaatgacagcctgggtgctgatggtacccatggagccggtgccatggagtct
gcggccggtgtgctcatcaagctcttttgtgtgcatactaaggcactacaagatgtgcag
attcgcttccagccacagctgaaccctgatgtagtggccccgcttcccacacacactgcc
cacgaggactttacatttggagagtctcggcctgaactgggctctgagggcctggggtca
gctgctcacggctcccagcctgacctccgacgaattgtggagctgcctgcacccgccgac
ttcctcagtctgagtagtgagaccaagcccaagttgatgacacctgatgccttcatgaca
cctagcgcctctctgcagcagatcactgcctgtcccagcagcagcagcagtggtagcagc
agcagcagcagcagcagcagtagcagcagctcccttacagctgtgtctgccatgagcagc
acctcagctgtggacccctccttggtcaggccacctgaggagctgaccttgagccccaaa
ctacagctggatggcagcctggcaatgagcaacagtggcagcctgcaggcaagccctcgt
ggcctcctgcccagcctactcccagccccagctgacaaactgactcccaaggggccaggc
caggtgcctactgctgcctctgcactgtccttggagctgcaggaagtcgagcccctgggg
ctaccccaagcctcccccagccgtacccgctctcctgatgtcatctcttcagcttccact
gccctgtcccaggacatccctgagattgcgtctgaggccctgtcccgtggctttggctcc
tctgcaccagagggccttgagccagacagtatggcttcagccgcctcagcattgcaccta
ctgtccccacggccccggccagggcctgagctcggcccccagcttggccttgatggaggc
cctggggatggagatcggcataataccccctccctcctggaggcagccttgacccaggaa
acctcgacccctgatggtcaggtttggcccacggcacctgacattactcgtgagacctgt
agcactcttgcagaaagccccaggaatggccttcaggaaaagcacaagagcctgtccttc
caccgaccaccgtatcacctgctgcagcaacgtgacagccaggatgccagtgctgagcaa
agtgatcacgacgatgaggtggccagccttgcctctgcttcaggaggctttggcaccaaa
gttcctgctccacggctgcctgccaaggactggaagaccaagggatcccctcgagcctca
cccaagctcaagaggaaaagcaagaaggatgatggggatgcggccatgggatcccggctc
acagagcaccaggtggcagagccccctgaggactggccaacgctaatttggcaacagcag
agagagctggcagagctgcagcacagccaagaagagctgctgcagcgtctgtgtacccag
ctcgaaggtctgcagaacactgtcacaggccacgtagaacgagcccttgagactcggcat
gagcaggagcagcggcggctggagcgagcactggctgaggggcagcagcggggagggcag
ctgcaggagcagctgacacaacagttgtcccaggcactgtcttcagctgtagctgggcgg
ctggagcgcagcttacgggatgagatcaagaagacagtccctccatgtgtctcaaggagt
ctggagcctgtggcaggccaactgagcaactcagtagccaccaagctcacagctgtggag
ggcagcatgaaagagaacatctctaagctgctcaagtccaagaacttgactgatgctatt
gcccgagcagctgcagacacattacaggggccaatgcaggctgcctaccgagaagccttc
cagagtgtggtgctgccagcctttgagaagagctgccaggccatgttccagcaaatcaat
gatagcttccgggtggggacacaggaatacttgcagcagctagaaagccacatgaagagc
cggaaggcacgagaacaggaggccagggagcctgtgctggcccagctgcggggcctggtc
agcacattgcagagtgccaccgagcagatggcagccactgtggccagcagtgttcgggct
gaggtgcagcaccagctgcacgtggctgtgggcagcttgcaggaatccattttagcacag
gtacaacgcattgttaagggtgaggtgagtgtggcgctcaaggagcagcaggctgctgtc
acctccagcatcatgcaggccatgcgttcagctgctggcacacctgtcccctctgcccac
cttgactgccaggcccagcaagcccatatcctccagctgctgcagcagggccacctcaat
caggccttccagcaggccctaacagctgctgacctgagcctagtgctgtatgtgtgtgaa
actgtggacccagcccaggtttttgggcagccaccctgcccactctcccagcctgtgctc
ctttccctcatccagcagctggcatctgaccttggcactcgaactgacctcaagctcagc
tacctggaagaggccgtgatgcacctggaccacagtgaccccatcactcgggaccacatg
ggctctgttatggcccaggtgcgccaaaagctttttcagttcctgcaggctgagccacac
aactcacttggcaaagcagcccggcgtctcagcctcatgctgcatggccttgtgacccct
agcctcccttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (15)   
   RefSeq(nuc) (3)   
   GenBank (6)   
   EMBL (6)   
Protein domain (4)   
   Pfam (4)   
All databases (47)   

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