KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100393031
Entry
100393031         CDS       T03264                                 
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
  KO
K11653  AT-rich interactive domain-containing protein 1
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03082  ATP-dependent chromatin remodeling
cjc04714  Thermogenesis
cjc05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    100393031 (ARID1B)
 09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    100393031 (ARID1B)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    100393031 (ARID1B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cjc03000]
    100393031 (ARID1B)
   03021 Transcription machinery [BR:cjc03021]
    100393031 (ARID1B)
   03036 Chromosome and associated proteins [BR:cjc03036]
    100393031 (ARID1B)
Transcription factors [BR:cjc03000]
 Eukaryotic type
  Helix-turn-helix
   ARID
    100393031 (ARID1B)
Transcription machinery [BR:cjc03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     100393031 (ARID1B)
Chromosome and associated proteins [BR:cjc03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    100393031 (ARID1B)
SSDB
Motif
Pfam: BAF250_C ARID
Other DBs
NCBI-GeneID: 100393031
NCBI-ProteinID: XP_035152912
Ensembl: ENSCJAG00000012474
Position
4:159775463..160212018
AA seq 2420 aa
MAARAAAAAAAAAARARARAGSGERRAPPGPRPAPGARDLEAGARGAAAAAAPGPMPGGG
GDSGGGLNSVHHHPLLPRHELNMAHNAGAAAAAAGTHSAKSGGSEAALKEGGSAAALSSS
SSAAAAASSSSSSGPGSAMETGLLPNHKLKTVGEAPAAPPHQQHHHHHHAHHHHHHAHHL
HHHHALQQQLNQFQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKD
SAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGVGALGAQQPPVAVPGGGGGP
AAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAGAPGSMDPLQN
SHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGSGGGGGGGGAGAGAGGAGAGAVAAAAA
AAAAAAGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRF
AGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAGAAAGG
QQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPVVMKRP
QLYGMGSNPHSQPQQSSPYPGGSYGPPGPQRYPIGLQGRTPGAMGGIQYPQQQMPPQYGQ
QGVSGYCQQGQQPYYSQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAP
GKPNHEDLNLIQQERPSSLPVGVLASEDAAFGLKDLSGSIDDLPTGTEATLSSAVSASGS
TSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMP
PQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMSQYGPQQTGPSMSPHPSPGGQMH
AGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQ
GPSQPCGAVPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEA
AAAVMQAAANSAQSRPPYIRSPAYPSQSGAGGRPMFSSQHPNYGNSQAPMAHQPDQYGQG
SFPSMNQSGLMASSSPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSAASMGLADMMSPGES
KLPLPLKADGKEEGTPQPESKSKDSHSSQGISQPPTPGNLPVPSPMSPSSASISSFHGDE
SDSISSPGWPKTPSSPKSSSSTTTGEKITKVYELGNEPERKLWVDRYLTFMEERGSPVSS
LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYL
FAFECKIERGEEPPPEVFSTGDTKKQPKLQPPSPANSGSLQGPQTPQSTGSNSMAEVPGD
LKPPTPASTPHGQMTPMQGGRSSTISVHDPFSDVSDSSFPKRNSMTPNAPYQQGMSMPDV
MGRMPYEPNKDPFGGMRKVPGSSEPFLTQGQMPNSGMQDVYSQSPSGAVSSLGMGQRQQF
PYGASYDRRHEPYGQQYPGQGPPSGQPPYGGHQPGLYPQQPNYKRHMDGMYGPPAKRHEG
DMYNMQYSSQQQDMYNQYGGSYSGPDRRPIQGQYPYPYSRERMQGPGQLQTHGIPPQMMG
GPLQSSSSEGPQQNMWAARNDMPYPYQNRQGPGGPAQAPPYPGMNRTDDMMVPDQRINHE
SQWPSHVSQRQPYMSSSASMQPITRPPQPSYQTPPSLPNHISRAPSPASFQRSLENRMSP
SKSPFLPSMKMQKVMPTVPASQVTGPPPQPPPIRREITFPPGSVEASQPVLKQRRKITSK
DIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVEYFRK
CLIDIFGILMEYEVGDPSQKALDHNAARKDDSQSLTEDSGKEEEDAECIDDDEEDEEDEE
EESEKTESEEKSSIALTAPDATADPKEKPKQASKFDKLPIKIVKKNNLFVVDRSNKLGHV
QEFNSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRPPPPLSSAGRKKEQEGKGDSEEQQ
EKSIIATIDDVLSARPGALPEDANPGPQTESSKFPFGIQQAKSHRNIKLLEDEPRSRDET
PLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHPGLVLILGKLILLHHEHPERK
RAPQTYEKEEDEDKGVPCSKDEWWWDCLEVLRDNTLVTLANISGQLDLSAYTESICLPIL
DGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLILATPPFSRQE
KFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAIAVQKGSIGNLISFLEDGVTM
AQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENRSEFLLHEGRLLDISISA
VLNSLVASVICDVLFQIGQL
NT seq 7263 nt   +upstreamnt  +downstreamnt
atggccgcgcgggcagcagcggcggcggcggcggcggcggcgcgggcgcgggcgcgggca
ggcagcggcgagcggcgggcgccccccgggccgcggccggcgcccggggcccgggacctg
gaggcgggggcgcgcggcgcggcggcggcggcggcaccgggacccatgccggggggcggc
ggcgacagcggcggcggcctgaacagtgtgcaccaccaccccctgctcccccgtcacgaa
ctcaacatggcccataatgcgggcgccgcggccgccgccgccggcacccacagcgccaag
agcggcggctccgaggcggctctcaaggagggtggaagcgccgccgcgctgtcctcctcc
tcctccgcggcggcggcggcgtcctcttcctcctcgtcgggcccgggctcggccatggag
acggggctgctccccaaccacaaactgaaaaccgttggcgaagcccccgccgcgccgccc
caccagcagcaccaccaccaccaccatgcccaccaccatcaccaccatgcccaccacctc
caccaccaccacgcactacagcagcagctaaaccagttccagcagcagcagcagcagcaa
cagcagcagcagcagcagcaacatcccatttccaacaacaacagcctgggcggcgcgggc
ggcggcgcgcctcagcccggccccgacatggagcagccgcaacatggaggagccaaggac
agtgccgcgggcggccaggccgaccccccgggcccgccgctgctgagcaagccgggcgac
gaggacgacgcgccgcccaagatgggggagccggcgggcggccgctacgagcacccgggc
gtgggcgccctgggcgcgcagcagccgccggtcgccgtgcccgggggcggcggcggcccg
gcggccgtcccggagtttaataattactatggcagcgctgcccctgcgagcggcggcccc
ggcggccgcgctgggccttgctttgatcaacatggcggacaacaaagccccgggatgggg
atgatgcactccgcctccgccgccgccggggcccccggcagcatggaccccctgcagaac
tcccacgaagggtaccccaacagccagtgcaaccattatccgggctacagccggcccggc
gcgggcggcggcggcggcggcggcggaggaggaggaggcagcggaggaggaggaggagga
ggaggagcaggagcaggagcaggaggagcaggagcgggagctgtggcggcggcggccgcg
gcggcggcagcagcagcaggaggcggcggcggcggctatgggggctcgtccgcggggtac
ggggtactgagctccccccggcagcagggcggcggcatgatgatgggccccgggggcggc
ggggccgcgagcctcagcaaggcggccgccggctcggcggcggggggcttccagcgcttc
gccgggcagaaccagcacccgtcgggggccaccccgaccctcaaccagctgctcacctcg
cccagccccatgatgcggagctacggcggcagctaccccgagtacagcagccccagcgcg
ccgccgccgccgccgtcgcagccccagtcccaggcggcggcgggggcggcggcgggcggc
cagcaggcggccgcgggcatgggcttgggcaaggacatgggcgcccagtacgccgctgcc
agcccggcctgggcggccgcgcaacaaaggagtcacccggcgatgagtcccggcaccccc
ggaccgaccatgggcagatcccagggcagcccaatggatccagtggtgatgaagagacct
cagttgtatggcatgggcagtaaccctcactctcagcctcagcagagcagcccgtaccca
ggaggttcctatggccccccaggcccacagcgatatccgattggcctccagggtcggact
cctggggccatgggaggaattcagtaccctcagcagcagatgccacctcagtatggacag
caaggtgtgagtggttactgccaacagggccaacagccatattacagccagcagccgcag
cccccgcacctcccgccccaggcgcagtatctgccgtcccagtcccagcagaggtaccag
ccgcagcaggacatgtctcaggaaggctatggaactagatctcaacctcctctggccccc
ggaaaacctaaccatgaagacttaaacctaatacagcaagaaagaccatcaagtttacca
gttggagtcttggcctcggaggatgcagcctttggactcaaggatctgtctggctccatt
gatgacctccccacgggaacagaagcaactttgagctcagcagtcagcgcatccgggtcc
acgagcagccaaggggatcagagcaacccggcgcagtcacctttctccccacatgcatcc
cctcatctctccagcatcccagggggcccgtctccctctcctgtcggctctcctgtagga
agcaaccagtctcgatctggcccaatctctcctgcaagtatcccaggcagtcagatgcct
ccgcagccacccgggagccagtcagaatccagttcccatcccgccttgagccagtcacca
atgccacaggaaagaggttttatggcaggcacacaaagaaaccctcagatgtctcagtat
ggacctcaacagacaggaccatccatgtcgcctcatccttctcctgggggccagatgcat
gctggaatcagtagctttcagcagagtaactcaagtgggacttacggtccacagatgagc
cagtatggaccacaaggtaactactccagacccccagcgtatagtggggtgcccagtgca
agctacagcggcccagggcccggtatgggtatcagtgccaacaaccagatgcatggacaa
gggccaagccagccatgtggtgctgtgcccctgggacgaatgccatcagctgggatgcag
aacagaccatttcctggaaatatgagcagcatgacccccagttctcctggcatgtctcag
cagggagggccaggaatggggccgccaatgccaactgtgaaccgtaaggcacaggaggca
gccgcagcagtgatgcaggctgctgcgaactcagcacaaagcaggccaccatacattagg
tcgcctgcttatcccagccagtctggggctggcggacgccccatgttttcttcccagcac
cccaactatggcaactctcaggctcccatggcgcaccagcctgaccagtacgggcaaggc
agtttccccagcatgaaccagagtggacttatggcttccagctctccctacagccagccc
atgaacaacagctccagcctgatgaacacgcaggcgccgccctacagcatggcacccgcc
atggtgaacagctcggcagcatctatgggtcttgcagatatgatgtctcctggtgaatcc
aaactgcccctgcctctcaaagcagacggcaaagaagaaggcactccacagcccgagagc
aagtcaaaggatagccacagctctcagggtatttctcagcccccaaccccaggcaacctg
ccagtcccttccccaatgtcccccagctctgctagcatctcctcatttcatggagatgaa
agtgatagcattagcagcccaggctggccaaagactccatcaagccctaagtccagctcc
tccaccaccactggggagaagatcacgaaggtgtatgagctggggaatgagccagagaga
aagctctgggtcgaccgatacctcaccttcatggaagagagaggctctcctgtctcgagt
ctgcctgccgtgggcaagaagcccctggacctgttccgactctatgtctgcgtcaaagag
attgggggtttggcccaggttaataaaaacaagaagtggcgtgagctggcaaccaaccta
aatgttggcacctcaagtagtgcagcaagctccctgaaaaagcagtatattcagtacctg
tttgccttcgagtgcaagatcgaacgcggggaggagcccccgccagaagtcttcagcacc
ggggacaccaagaagcagcccaagctccagccgccatctcctgctaactcaggatccttg
caaggcccacagaccccccagtcaactggaagcaattccatggcagaggttccaggtgac
ctgaagccacctaccccagcctccacccctcatggacagatgaccccaatgcaaggtgga
agaagcagtacaatcagtgtgcacgacccattctcagatgtgagtgattcatccttcccg
aaaaggaactccatgactccaaacgccccctaccagcagggcatgagcatgcccgacgtg
atgggcaggatgccctatgagcccaacaaggacccctttgggggaatgagaaaagtgcct
ggaagcagcgagccctttctgacgcaaggacagatgcccaacagcggcatgcaggacgtg
tacagccagagcccctccggagcagtgtccagtctaggcatggggcagcgccagcagttt
ccctatggagccagttacgaccgaaggcatgaaccttatgggcagcagtatccaggccaa
ggccctccctcgggacagccgccgtatggagggcaccagcccggcctgtacccgcagcag
ccgaattacaaacgccatatggacggcatgtacgggcccccagccaagcgccacgagggc
gacatgtacaacatgcagtatagcagccagcagcaggacatgtacaaccagtacggcggc
tcctactcagggccggaccgcaggcccatccagggccaatacccctatccctacagcagg
gagcggatgcagggcccagggcagctccagacacacggaatcccacctcagatgatgggc
ggcccactgcagtcatcctccagcgagggtcctcagcagaatatgtgggcagcacgcaat
gatatgccttatccctaccagaacaggcagggccctggcggccctgcacaggcgccccct
tacccaggcatgaaccgcacggacgatatgatggtacctgatcagaggataaaccatgag
agccagtggccttctcacgtcagccagcgtcagccttatatgtcgtcctcagcctccatg
cagcccatcacgcgcccgccacagccgtcctaccagacgccaccatcactgccaaatcac
atctccagggcacccagcccagcgtccttccagcgctccctggagaaccgcatgtctcca
agcaagtctccctttctgccctccatgaagatgcagaaggtgatgcccacggtccccgca
tcccaggtcaccgggccgccgcctcagccaccccccatcagaagggagattacctttcct
cctggctcagtagaagcatcacagccggtcttgaaacaaaggcgaaagattacctccaaa
gatatcgttactcctgaggcctggcgtgtgatgatgtcccttaaatcaggtcttttggct
gagagtacgtgggctttggacactattaatattcttctgtatgatgacagcactgttgct
actttcaatctctcccagttgtctggatttctcgaacttttagtcgagtactttagaaaa
tgcctgattgacatttttggaattcttatggaatacgaagtgggagaccccagccaaaaa
gcacttgaccacaacgcagcaaggaaagatgacagccagtccttgacagaggattctggg
aaagaggaggaagatgctgaatgtattgatgacgacgaggaagacgaggaggacgaggag
gaagagagcgagaagacagaaagtgaggagaagagcagcatcgctctgactgccccagac
gccactgcagacccaaaggaaaagcccaagcaagccagtaagttcgacaagctgccaatc
aagatagtcaaaaagaacaacctgtttgttgtggaccgatccaacaagttggggcatgtg
caggagttcaacagtggacttctgcactggcagctcggcgggggcgacaccaccgagcac
atccagactcactttgagagcaagatggaaattcctcctcgcaggcgcccgcctccccct
ttaagctctgcaggtagaaagaaagagcaagaaggcaagggcgactctgaagagcagcaa
gagaaaagcatcatagcaaccatcgatgacgtcctctctgctcggccaggggcactgcct
gaagacgcaaaccctgggccccagaccgaaagcagtaagtttccctttgggatccagcaa
gccaaaagtcaccggaacatcaagctgctggaggacgagcccaggagccgggacgagact
ccgctgtgcaccatcgcacactggcaggactcgctggctaagcggtgcatctgtgtgtcc
aatatcgtccgtagcttgtcgttcgtgcctggcaacgatgccgaaatgtccaaacatcca
ggcttggtgctgatcctggggaagctgattcttcttcaccacgagcatcctgagagaaag
cgagcaccgcagacctatgagaaggaggaggatgaggacaagggggtgccatgcagcaag
gatgagtggtggtgggactgcctcgaggtcttgagggataacacattggtcacgttggcc
aacatttccgggcagctagacttgtctgcttacacggaaagcatctgcttgccaattttg
gatggcttgctgcactggatggtgtgcccatctgcagaggcacaagatccctttccaact
gtgggacccaactcggtcctgtcgcctcagagacttgtgctggagaccctctgtaaactc
agtatccaggacaataatgtggacctgatcttggccactcctccatttagtcgtcaggag
aaattctatgctacgttagttaggtacgttggggatcgcaaaaacccagtctgtcgagaa
atgtccatggcgcttttatcgaaccttgcccaaggggacacactagcagcaagggccata
gctgtgcagaagggaagcattggaaacttgataagcttcctagaggatggggtcacgatg
gcccagtaccagcagagccagcacaacctcatgcatatgcagcccccgcccctggaaccg
cctagcgtggacatgatgtgcagggcggccaaggctttgctggccatggccagagtggac
gaaaaccgctcggagttccttttgcacgagggccggttgctggatatctcgatatcagct
gtcctgaactctctggttgcttctgtcatctgtgatgtactgtttcagattgggcagtta
tga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (8)   
   RefSeq(pep) (8)   
DNA sequence (14)   
   RefSeq(nuc) (8)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (67)   

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