KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100399275
Entry
100399275         CDS       T03264                                 
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X7
  KO
K14409  protein SMG7
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100399275 (SMG7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cjc03019]
    100399275 (SMG7)
Messenger RNA biogenesis [BR:cjc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     100399275 (SMG7)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     100399275 (SMG7)
SSDB
Motif
Pfam: EST1_DNA_bind EST1 TPR_2 TPR_17 TPR_7
Other DBs
NCBI-GeneID: 100399275
NCBI-ProteinID: XP_002760326
Ensembl: ENSCJAG00000005135
UniProt: U3BZ42
Position
18:35338949..35420767
AA seq 1136 aa
MSLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHVTVI
NLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFMSFLGILCKCPLQNESPEESYNAYP
LPAVKVSMDWLRLRPRVFQEAVVDERQYIWPWLISLLNSFHPHEEDLSSTNATPLPEEFE
LQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLMQCENEV
GKLLFITEIPELILEDPSEAKENLILQETSVIESLAADGSPGLKSVLSTSRNLSNNCDTG
EKPMVTFKENIKPREVNRDQGRSFPPKEVRRDYSKGITVTKNDGKKDNNKRKTETKKCTL
EKLQETGKQNVAVQVKSQTELRKTPVSEARKTPVTQTPTQASNSQFIPIHHPGAFPPLPS
RPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQSHIPYSQ
QRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQPTSQLQVQALTQQQQSPTKAVPALGK
SPPHHSGFQQYQQADASKQLWNPPQVQGPLGKIMPVKQPYYLQTQDPIKLFEPSLQPPVM
QQQPLEKKMKPFPMEPYNHNPSEVKVPEFYWDSSYSMADNRPVMAQQANMDRRGKRQTVF
RPEQDPVPRMPFEKSLLEKPSELMSHSSSFLSLTGFSLNQERYPNNSMFNEVYGKNLAPS
SKAELNPSMAPQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNH
NSVPFSNFGPIGTPDNRDRRTADRWKTDKPAMGGFGIDYLSATSSSESNWHQASTSSGPW
TGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGTMNPPH
NT seq 3411 nt   +upstreamnt  +downstreamnt
atgagcctgcagagcgcgcagtacctccggcaggcagaagtcctgaaggctgacatgaca
gattctaagctgggtccagctgaagtctggacatccaggcaggctctgcaggacctgtac
cagaaaatgctagttactgatttggaatacgctttagacaagaaagtagagcaggatctc
tggaatcacgcctttaagaatcagatcacaacactacaaggccaggcaaagaatcgagca
aatccgaatcggagtgaagttcaggcaaacctttctctgttcctagaggcagctagtggc
ttctatactcagttattacaagaactgtgtacagtatttaatgtagatttaccatgccgt
gtgaagtcttcccaattgggaattatcagcaataaacagacgcataccagcgccatagtg
aagccacagtctagctcctgttcctatatctgccagcactgcctcgtccaccttggagac
attgctcgatacagaaaccagaccagccaggcagagtcctactataggcatgcagctcag
cttgtcccctccaatggtcagccttacaatcagttggctatcttagcttcttccaaagga
gaccatctgaccacaattttctactactgcagaagcattgctgtgaagttccctttccca
gctgcctccactaatctgcaaaaagcactttctaaagcactggaaagccgagatgaggtg
aaaaccaagtggggtgtttctgacttcatcaaggcctttattaaattccacggtcatgtg
tacctgagtaagagcttggaaaagttgagccctcttcgagagaaattggaagaacagttt
aagaggctgctattccaaaaagctttcaactctcagcagttagttcatgtcactgtcatt
aacctgtttcaacttcatcaccttcgtgactttagcaatgaaaccgagcagcacagttac
agccaagatgagcagctatgttggacacagttgctggccctctttatgtcttttcttggc
atcctgtgcaagtgtcctctccagaatgagtctccggaggagtcctacaacgcctaccct
cttccagcagtcaaggtctccatggactggctaagactcagacccagggtcttccaggag
gcagtggtggatgaaaggcagtacatttggccctggctgatttctcttctgaatagcttc
catccccacgaagaagacctctcaagtactaacgcaacaccacttccagaggagtttgaa
ttacaaggattcttggccttgagaccttctttcaggaacttggatttttccaaaggtcac
cagggtattacaggagacaaagaaggtcagcaacgacgaatacgacagcagcgcttgatc
tctataggcaaatggatcgctgataatcagccaaggctgatgcagtgtgaaaatgaagta
gggaaattgttgtttatcacagaaattccagaattaatactggaagaccccagtgaagcc
aaagagaacctcattctgcaagaaacatctgtgatagagtcgctggctgcagatgggagc
ccagggctgaaatcagtgctatctacaagccgaaatttaagcaacaactgtgacacagga
gagaagccaatggttaccttcaaagagaacattaagccacgagaagtgaacagagaccag
ggaagaagttttcctcccaaagaggtgagaagggactatagcaaaggaataactgtaact
aagaatgatggaaagaaggacaacaacaagaggaaaactgaaaccaagaaatgcacctta
gaaaagttacaggaaacaggaaagcagaatgtggcagtgcaggtaaaatcccagacagaa
ttaagaaagactccagtgtctgaagccaggaaaacaccggtaactcaaactccaacccaa
gcaagtaactcccagttcatccccattcatcaccctggagccttccctcctcttcccagc
aggccagggtttccgcccccaacatatgttatcccccctcctgtggcattttctatgggc
tcaggttacaccttcccagctggtgtttctgtcccgggaacctttcttcagcctacagct
cactctccagcaggaaaccaggtgcaagctgggaaacagtcccacattccttacagccag
caacggccctctggaccagggccaatgaaccagggacctcaacaatcacagccaccttcc
cagcaaccccttacatctttaccagctcagccaacagcacagcctacaagccagttgcag
gttcaagctctaactcagcaacaacaatcccctacaaaagctgtgccagctttggggaaa
agcccgcctcaccactctggattccagcagtatcaacaggcagatgcctccaaacagctg
tggaatcctcctcaggttcaaggcccattagggaaaattatgcctgtgaaacagccctac
taccttcagacccaagaccccataaaactgtttgagccgtcattgcaacctcctgtaatg
cagcagcagcctctagaaaaaaaaatgaagccttttcccatggagccatataaccataat
ccctcagaagtcaaggtcccagaattctactgggattcttcctacagcatggctgataac
agacctgtaatggcacagcaagcaaatatggaccgcaggggcaaacggcaaacagtcttc
cgtccagagcaggatcctgtgcccaggatgccgtttgagaaatccttattggagaaaccc
tcagagctcatgtcacattcatcctctttcctgtccctcaccggattctctctcaatcag
gaaagatacccaaataatagtatgttcaatgaggtatacgggaaaaacctggcacccagc
tccaaagcagaactcaatccctcaatggctccccaggaaacatctctgtattcccttttt
gaaggaactccatggtctccatcacttcctgccagttcagaccattcaacaccagccagc
cagtctcctcattcctctaacccaagcagtctgcccagctctcctccaactcacaaccat
aattctgttccattctccaattttggacccattgggactccagataacagggataggagg
actgcagatcggtggaaaactgataagccagccatgggtgggtttggcattgattatctc
tcagcgacgtcatcctctgagagcaattggcatcaggccagcacttcaagtggcccctgg
acaggccatggcccctccatggaggattcctctgctgttctcatggaaagcctaaagtct
atctggtccagttccatgatgcatcctggaccttccgctctggagcagctgttaatgcag
cagaagcagaaacagcaacggggacaaggcaccatgaaccctccacactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (11)   
   UniProt (1)   
   RefSeq(pep) (10)   
DNA sequence (38)   
   RefSeq(nuc) (10)   
   GenBank (14)   
   EMBL (14)   
Protein domain (5)   
   Pfam (5)   
All databases (71)   

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