KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100401502
Entry
100401502         CDS       T03264                                 
Symbol
SYNM
Name
(RefSeq) synemin isoform X1
  KO
K10376  desmuslin
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:cjc04812]
    100401502 (SYNM)
Cytoskeleton proteins [BR:cjc04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type VI
     100401502 (SYNM)
SSDB
Motif
Pfam: Filament
Other DBs
NCBI-GeneID: 100401502
NCBI-ProteinID: XP_008996562
Ensembl: ENSCJAG00000016926
UniProt: U3C005
Position
6:complement(8772980..8803745)
AA seq 1552 aa
MLSWRLQTGPEKAELQELNARLYDYVCRVRELERENLLLEEELRGRQGLQGLWAEGQARC
AEEARSLRQQLEELSGATALAEGERDALRRELRELQRLDAEERAARGRLDAELGAQRREL
QEALGARAALEAMLGRLLAERRGLDAAHERDVRELRARAASLTMHFRARATGPAAPPLRL
REVHDSYALLVSESWRETVQLYEDKVRELEEALRRGQESRLQAEEETRLCAQEVEALRRE
ALGLEQLRARLEDELLRMREEYGLQAEERQRVIDRLEDEKATLTLAMADWLRDYQDLLQV
KTGLSLEVATYRALLEGESNPEIVVWTEHTENMPSEFRNKSYHYTESVLQRENERNQFSR
QKATLASLNHGSALYSSLSGHRGSQTGTSIGGAARRGFLGSGYSSSATTQQENSYINSQT
SVRTFFPTYGPLRNTEAQVKTFLDRPKAGDTREVPVYIAEDSTVARQSSRECRDNVAARA
LESTQSNERTIILGKKTEVKAPREQERNRPETIRTKPEEKMFDSKEKASEERNLRWEELT
KLDKEARQRESQQMREKEPLKEKSVREREIPISLEVSQDRRAEASPKGLQTPVKDAGGGT
GREAKARELQFRLGTSDATGALPGDSMTETVAENIVTSILKQFTQSPEAEASADSFPDTK
VTYVDRKELPMERKTKTEIVVESKLTEDVDVSDEAGLDYLLSKDIKEVGLKGKSAEQMIG
DIINLGLKGREGRAKVVNVEIVEEPVSYVSGEMPEEFSVPFEVEEVDDVSPGSGGLVKEE
EGYGERDVTFSVNQHQRTKQPQENTTHVEEVTEAGDSEGEQSYFVSTPDEYPGGHDRDDG
SVYGQIHIEEESTIRYSWQDEIVQGTRRRTQRDDAVGEKVVKPSDVPAPSLEGDLGSTHW
KEQSRSGEFHAEATVIEKEIKIPHEFHTSMKGISSKEPRQQLVEVIGQLEETLPERMREE
LAALTTEGQGGPGSVSVDVKKIQAADGGSVTLVAEVNLSQTVDANQLDLEELSRDEAGEM
EKAVESVVRESLSKQRRPVPGSPDEADGAEAPGTGVRFRRWATRELYIPSGKSEDAGQST
HSSGWHSPQGPVSATVEVSSPTGFSQSQVLEDVSQAARHITLGPSEVWRTERMSYEGPTA
EVVEVSEGGDLSQAVSPTGGSRSVRHVTLGPGQSPPSREVVFQGPAPASPEDGGSPEPGP
VEFSSDMDGSGRHSTFGSKQFHAEKEILFQGPISAAGKVGDYFATEESVGTQISVRQLQL
GPREGFSGQIQFTTPLSDKLELGVRGDSVHTEGLPGSSTSIRHISLGPQRHQTTQQIVYH
GLLPRPGESGDSESIVHRESSADVPQATHSHTVGRKTFMTEKSTFQSVISESPEEDSAGD
MSGAEVTSGISRSFRHIQLGPTENETSECVVIRGPVSRTLVLPGSAASPELDELEDSRRT
LRHTAPGPKETSFTFQMDVSNVEAIRSRTQEAGARGVSDRGAWRDTDSRDDQAVGVSFKV
SAGEEQGKEQAMFDKKVQLQRMVDQRSVISDEKKVALLYLDSEEEENDGHWF
NT seq 4659 nt   +upstreamnt  +downstreamnt
atgctgtcctggcggctgcagacgggccccgagaaggccgagctgcaggagctcaacgcc
cggctctatgactacgtgtgccgggtgcgggagctggagcgcgaaaacctgctcctggag
gaggagctgcgcggccggcaagggctacagggcctgtgggccgaggggcaggcccgctgc
gccgaggaggcgcgcagcttgaggcagcagctggaagagctgagcggggccactgcgcta
gctgagggcgagcgggacgcgctgcggcgcgagctgcgggagctgcagcgcctggatgcg
gaggagcgcgccgcccgcggccgcctggacgccgagctgggcgcgcagcggcgcgagctg
caggaggcgctgggcgcgcgcgccgcgctcgaggcgatgctgggccggctgctggcagag
cgccgcggcctcgacgcggcccacgaacgcgacgtgcgggagttgcgcgcgcgcgccgcc
agcctgaccatgcactttcgcgcccgcgccaccggccccgccgcgcccccactgcgcctg
cgggaggtgcacgacagctacgcgctgctggtttcggagtcgtggcgggagacagtgcag
ctgtacgaggacaaggtgcgggagctggaggaggcgctgcggcgcggccaggagagccgg
ctgcaggcggaggaagagacgcggctgtgcgcgcaggaggtcgaggcgctgcggcgcgag
gcgctcggattggagcagctacgcgcgcggctggaggacgagctgctgcggatgcgcgag
gagtacgggctgcaagcggaggaacggcagagagtgattgaccgcctggaggatgagaag
gcgaccctcaccttggccatggctgactggctgcgggactatcaggacctcctgcaggtg
aagactggcctcagcctggaggtggcaacctaccgggccttattggaaggagaaagtaat
ccagagatagtggtctggactgagcacactgaaaacatgccatcagaattcagaaacaaa
tcctatcactataccgaatcagtattacagagagaaaatgaaagaaatcaattttcaagg
cagaaagcaactttggcgagtttaaatcatggctcagctctgtattctagcctgtcaggg
caccgtggatctcagacgggcacatctattggaggcgctgccagaagaggcttcctgggc
tcgggatattcttcctcggccactacccagcaggaaaactcttacatcaacagtcaaacc
agtgtcagaactttctttccaacctatggccctttaagaaatactgaggctcaagtgaaa
acattccttgacagaccaaaagctggagatacaagggaggtccccgtttacatagctgaa
gattccacagttgcccgccagtcatcccgggaatgccgagacaatgtggcggcaagagct
ttggaaagcacacagtcaaatgagaggaccatcattctgggaaagaaaacagaagtgaaa
gccccaagggagcaagaaagaaacagaccagaaaccatccgaacaaagccagaagagaaa
atgttcgattctaaagagaaggcttccgaggagaggaacctaagatgggaagaactgacg
aagttagacaaagaagcaagacagagagaaagccagcagatgagggagaaagagccactg
aaggagaaaagcgtgcgagagagagagataccgattagtctagaagtatcccaggacaga
agagcagaggcatccccgaaaggtttgcagacccccgtgaaggatgctggtggcgggact
ggtagagaggcaaaagcaagagagctgcagttcaggttgggcactagtgatgccactggt
gcgctgccaggcgattccatgacagaaaccgtagcagaaaacatcgttaccagcatcctg
aagcagttcactcagtctccagaggcagaagcatctgctgattcttttccagacacaaaa
gtcacttacgtggacagaaaagagcttcctatggaaaggaaaacgaagaccgaaatagtc
gtggagtctaaactgaccgaggacgttgatgtttccgatgaagctggcctggactacctt
ttaagcaaggatattaaggaagtggggctgaaaggcaagtcggctgagcagatgatagga
gacatcatcaacctcggcctgaaagggagggagggcagagcgaaggtcgtcaatgtggag
atcgtcgaggagcccgtgagctatgtcagcggggagatgccagaggaattttctgtccca
tttgaggtggaggaggttgatgatgtgtccccaggctccggagggttggttaaggaagag
gaaggttatggagagagagatgtcacattctcagttaatcagcatcagaggaccaagcag
ccccaggagaatacgactcatgttgaagaagtgacagaggcaggtgactcagagggtgag
cagagttattttgtgtcaactccagatgaataccctggggggcatgacagagatgatggt
tccgtgtatgggcagatccacatcgaggaggaatccaccatcaggtactcttggcaggat
gaaattgtgcaggggactcgaaggaggacacagagggatgatgcagtgggcgagaaggtt
gtgaagccctcggatgtcccagcgccctctctggagggggacctgggttccactcactgg
aaagaacaatctagaagtggtgaatttcatgccgaagccaccgtcattgaaaaagaaatt
aaaataccccatgaattccacacctccatgaagggcatctcctccaaggagccccggcag
cagctggtggaggtcatcgggcagctagaggaaacccttcctgagcgcatgagggaagag
ctggctgccctcaccactgaggggcagggtgggccagggagtgtttccgtggacgtcaag
aagatccaggctgctgatggtggctccgtgaccctggttgctgaggtcaacctctcacaa
actgtggatgccaatcagttagacctagaggagctgagcagagatgaggccggtgagatg
gagaaagctgtggagtcagtggttcgggagagcctgagcaagcaacgcagacccgtgcct
ggcagcccagatgaggcagatggagcagaggccccgggcactggtgttcgcttcaggcgt
tgggccaccagggagctgtacatcccctcaggcaagagtgaggatgcgggccagtccact
cacagctcgggatggcacagcccccagggcccagtgtcggccactgtggaggtcagcagc
cccacgggcttttcccagtcacaggtgctggaggacgtgagtcaggctgcaaggcacatt
actctcggcccgtctgaggtctggaggactgagcgaatgtcatatgaaggacctactgcg
gaagtggtagaggtaagtgagggaggtgacctaagtcaggcagtgagcccgaccggaggc
agccggtctgtgaggcatgtcacgctgggtcccggtcagagtccaccatccagagaagtt
gtcttccaaggccctgcccctgcctctccggaggatgggggctcgccagagcctggcccg
gtcgagttttcttcagatatggatggatcagggaggcatagtacgtttggctccaaacaa
tttcatgctgaaaaggagattctttttcagggccccatttctgctgcagggaaggttggt
gattattttgcaacagaagagtcagtgggtacccagatttctgtaaggcaactccagtta
ggccctagagaagggttcagtgggcagatccagtttacaactccactttcagacaagctg
gagttgggtgtcagaggagattctgtacacacggaagggttgccagggagcagcacgtcc
atcaggcacatcagccttgggcctcagaggcatcagaccacccagcagatagtttaccat
gggctgcttccccgacccggggaatctggtgactcagagagcattgtgcacagggagagc
tcagcagatgtgccccaggccactcatagtcataccgtaggtagaaaaacctttatgact
gaaaagagcaccttccaaagtgtcatttcggaatctcctgaggaggatagtgcaggggac
atgtcaggggcagaagtgacatcgggtattagcagatcctttaggcacattcagctaggt
cccacagaaaatgaaacctctgaatgtgttgtcatccgtggacctgtgtccagaacatta
gtgcttcctggttcagcggcctcccctgagctagatgagttagaagacagcagaagaacg
cttaggcacactgcaccagggcccaaagaaacttcatttacctttcagatggatgtgagt
aacgtagaggccatccgcagccggacacaggaagcaggagctcgcggtgtgtctgaccgt
ggtgcctggagagacacggacagtagggatgatcaggcagttggcgtgagctttaaagtc
tctgctggggaagaacagggcaaggagcaggccatgtttgataagaaggtgcagctacag
agaatggtagaccaaaggtcagtgatttcggatgaaaagaaagttgccctcctctatcta
gacagtgaggaggaggagaatgatgggcattggttttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (9)   
   RefSeq(nuc) (3)   
   GenBank (3)   
   EMBL (3)   
Protein domain (1)   
   Pfam (1)   
All databases (42)   

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