KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100403998
Entry
100403998         CDS       T03264                                 
Symbol
SMG5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5 isoform X1
  KO
K11125  protein SMG5
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100403998 (SMG5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cjc03019]
    100403998 (SMG5)
   03032 DNA replication proteins [BR:cjc03032]
    100403998 (SMG5)
Messenger RNA biogenesis [BR:cjc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     100403998 (SMG5)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     100403998 (SMG5)
DNA replication proteins [BR:cjc03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (animals)
    100403998 (SMG5)
SSDB
Motif
Pfam: EST1_DNA_bind EST1 PIN_4
Other DBs
NCBI-GeneID: 100403998
NCBI-ProteinID: XP_008982846
Ensembl: ENSCJAG00000005684
UniProt: F7ID90
Position
18:complement(10203337..10247148)
AA seq 1016 aa
MSQGPPTGESSEPEAKVLHTKRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLR
ELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIG
FYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMACHRCLVYLGD
LSRYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQ
SEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPGKKRCKDIKRLLVNFMYLQSLLQP
KSSSVDSELTSLCQSVLEDFNLCLFYLPSSPNLSLASEDEEEYESGYAFLPDLLIFQMVI
ICLMCVHSLERAGSKQYSAAIAFTLALFSHLVNHVNIRLQAELEEGENPVPAFQSDGTDE
PESKEPLEKEEEPDPEPPPIAPQVGEVRKSRKFSRLSCLRRRRHPPKAGDDSDLSEGFES
DSSRDSARASEGSDSGSDKSLEGRGTAFDAETDSEMNSQESRSDLEDMEEEEGTRSPALE
PPRARSEASDSLNGPLGPSEASIASNLQAMSTQMFQTKRCFRLAPTFSNLLLQPTTDPHT
SASRRPCVNGDVDKPSEPASEEGSESEGSESSGRSCRNERSIQEKLQVLMAEGLLPAVKV
FLDWLRTNPDLIIVCAQSSQSLWNRLSVLLNLLPAAGELQESGLALCPEVQDLLEGCELP
DLPSSLLLPEDMALRNLPPLRAAHRRFNFDTDRPLLSALEESVVRVCCIRSFGHFIARLQ
GSILQFNAEVGIFVSIAQSEQESLLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQL
EGSLQQPRAQSAMSPYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKENP
GARDGIRYLEAEFKKGNRYIRCQKEVGKSFERHKLKRQDADAWTLYKILDSCKQLTVAQG
TGEEDPSGMVTIITGLPLDNPSVLSGPMQAALQAAAHASVDIKNVLDFYKQWKEIG
NT seq 3051 nt   +upstreamnt  +downstreamnt
atgagccaaggcccccccacaggggagagcagcgagcccgaagcaaaagtcctccacact
aagcggctttaccgggctgtggtggaggctgtgcatcgacttgacctcatcctttgcaac
aaaaccgcttatcaagaagtattcaaaccagaaaatattagcctgaggaacaagcttcgt
gagctctgcgtcaagcttatgttcctgcacccagtggactatgggagaaaggctgaggag
ctgctgtggagaaaggtatactatgaagttatccagcttatcaagactaacaaaaagcac
atccacagccggagcactttggaatgtgcctacaggacgcacctggttgctggtattggc
ttctaccagcatctccttctctatatccagtcccactaccagctggaactgcagtgctgc
atcgactggacccacgtcactgaccccctcataggatgcaagaagccagtgtctgcctca
gggaaggagatggattgggcacagatggcatgccaccgatgtctagtgtacctgggggat
ttgtcacgatatcagaatgaattagctggtgtagatactgagctactggccgagagattt
tactaccaagccctgtcagtagctcctcagattggaatgcccttcaatcagttgggcacc
ctggcaggcagcaagtactataatgtggaagccatgtattgctacctgcgctgcatccag
tcagaagtgtcctttgagggggcctatgggaacctcaagcgcctgtatgacaaggcagcc
aaaatgtaccaccaactcaagaagtgtgagactcggaaactgtctcccggcaaaaagcga
tgtaaagacattaaaaggctgctggtgaactttatgtatttgcaaagcctcctacagccc
aaaagcagctccgtggactcagagctgacctcactttgccagtcagtcctggaggacttc
aacctctgccttttctacctgccctcctcacccaacctcagcctggccagtgaggatgag
gaggagtatgagagtggatatgctttcctcccggaccttctcatctttcaaatggtcatc
atctgccttatgtgtgtgcacagcttagagcgagcaggatccaagcagtacagtgcagcc
attgccttcaccctggcccttttctcccacctcgtcaatcatgtcaacatacggctgcag
gccgagctggaagagggcgagaatcccgtcccggcattccagagtgatggcacagatgaa
ccagagtcgaaggaacctctggagaaagaggaggagccagatcctgagcctcctcctata
gcaccccaagtaggtgaggtcagaaagagccgtaagttctcccgcctctcctgcctccgc
cgtcgccgccacccaccgaaagctggcgatgacagtgacctgagtgaaggctttgaatcg
gactcaagccgtgactcagcccgggccagtgaaggctcggacagtggctctgacaagagt
cttgaaggtcggggaacggcctttgatgctgaaacagactcagaaatgaatagccaggag
tcccgatcagacttggaagatatggaggaagaggaggggacaaggtcaccagccctggag
ccccctcgggccagatcagaggcttctgattccctcaatggcccactgggccccagtgag
gctagcattgccagcaatctacaagccatgtccacccagatgttccagactaagcgctgc
ttccggctggcccccacctttagcaacctgctcctccagcccaccaccgaccctcatacc
tcagccagccgcaggccttgtgtcaatggggatgtagacaagccctcagagccagcctct
gaagagggctctgagtcagaggggagtgagtccagtggacgctcctgtcggaatgagcgc
agcattcaggagaagcttcaggtcctgatggccgaaggcctgcttcctgctgtgaaagtc
ttcctggactggcttcggaccaaccccgacctcatcattgtgtgtgcacagagctctcaa
agtctgtggaaccgcctgtctgtgttgctgaatctgttgccagctgctggcgaactccag
gagtctggcctggccttgtgtcctgaggttcaggatcttcttgaaggttgtgagctgcct
gacctcccctctagccttctgctcccggaggacatggcccttcgtaacctgcctcccctc
cgagctgcccacagacgctttaactttgacacagatcggcccctcctcagcgctttagaa
gagtcagtggtgcgcgtctgctgcatccgcagctttggtcacttcatcgcccgcctgcaa
ggcagcattctgcagttcaacgcagaggttggcatcttcgtcagtattgcccagtctgag
caggagagcctgctgcagcaggcccaggcgcagttccgaatggcacaggaggaagctcgt
cgcaacaggctcatgagagacatggctcagctacgacttcagctcgaggtctctcagctg
gagggcagcttgcagcagcccagggcccagtcggctatgtctccctacctcgtccctgac
acccaggccctctgccaccatctccctgtcatccgccaactggccaccagtggccgcttc
attgtcatcataccaaggacggtgattgatggcctggatttgctgaagaaggaaaaccca
ggggcccgggatgggattcggtacctggaggcagagtttaaaaaaggaaacaggtacatt
cgctgccagaaagaggtgggaaagagctttgagcggcataagctgaagaggcaggatgca
gatgcctggactctctataagatcctggacagctgcaaacagctgactgtggcccaggga
acaggtgaggaggacccaagtggcatggtgaccatcatcacaggccttccactggacaac
cccagcgtgctttcaggccccatgcaggcagccctgcaggccgctgcccatgccagcgtt
gacatcaagaatgttctggacttctacaagcagtggaaggagattggttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (13)   
   RefSeq(nuc) (3)   
   GenBank (5)   
   EMBL (5)   
Protein domain (3)   
   Pfam (3)   
All databases (37)   

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