KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100406206
Entry
100406206         CDS       T03264                                 
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like
  KO
K13126  polyadenylate-binding protein
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03015  mRNA surveillance pathway
cjc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100406206 (PABPC1L)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100406206 (PABPC1L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cjc03019]
    100406206 (PABPC1L)
   03041 Spliceosome [BR:cjc03041]
    100406206 (PABPC1L)
Messenger RNA biogenesis [BR:cjc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     100406206 (PABPC1L)
   mRNA cycle factors
    Stress granule specific factors
     100406206 (PABPC1L)
Spliceosome [BR:cjc03041]
 Complex C
  Other components
   Complex C specific factors
    100406206 (PABPC1L)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_7 Nup35_RRM RRM_occluded
Other DBs
NCBI-GeneID: 100406206
NCBI-ProteinID: XP_035154583
Ensembl: ENSCJAG00000017628
Position
5:38261719..38293700
AA seq 619 aa
MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFS
TFGNILSCKVACDKHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERA
AELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEK
HEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQGVNLYVKN
LDDSIDDDKLRKEFSPYGVITSAKVMTEGSHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAY
YGCGPVTPTQPAPRWTSQPPRPSSIYPPGASMVRPPVMPRCPPAHISSVRQASTQVPRTV
PHTQRVANIGTQTTGPSGVGCCTPGRPLLPYKCSSAAHSTDQVQEPAVHIPGHEPLTASM
LAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDE
AVAVLQAHQAVEQPKAFMH
NT seq 1860 nt   +upstreamnt  +downstreamnt
atgaacgccagcgggtcgggctacccgcttgcctcgctctacgtgggcgatctgcacccc
gacgtgaccgaggcaatgctctacgagaagttctctcccgccggctctatcctgtccatc
cgcgtgtgtcgcgatgtggccaccaggcgctcgctgggctatgcctacatcaacttccag
cagcccgccgacgcggagcgggcactggacacaatgaactttgagatgctgaaaggccag
cctattcgcatcatgtggtcccaaagagacccaggacttcgcaagtcaggtgtgggcaac
atcttcattaagaacctggaggactccattgacaacaaagccttgtatgataccttctcc
acctttgggaacatcctctcttgcaaggtggcatgtgacaagcatggctcccgcggtttc
ggcttcgttcattttgagacccatgaggccgcacagcaggccatcaacaccatgaatggg
atgctgctgaatgaccgcaaagtctttgtgggccacttcaagtctcgacgggagcgagcg
gcggagctgggagcgcgagccctggagttcaccaacatctacgtgaagaacctcccggcg
gatgtggatgagcagggcctgcaggacctcttctcccagtttgggaagatgctgagtgtg
aaggtgatgagggacaacagcggccgctcgcggtgctttggctttgtcaactttgagaag
cacgaggaagcccagaaggctgtggtccatatgaatgggaaggaggtgagtgggcggctg
ctgtatgcgagccgggcccagaagcgcgtggagcggcagaatgaactgaagcgcaagttt
gagcagatgaagcaggaccggctgagccgttaccagggcgtgaacttgtacgtgaagaac
ctggatgactccattgatgatgacaaactgaggaaagagttctctccctatggagtgatt
accagtgcgaaggtgatgacagagggtagccacagcaagggatttggctttgtgtgtttt
tcttccccagaagaggcgacaaaggccgtgacagagatgaacgggcgcatcgtgggcacc
aagccactctatgtggcactggcccagcgcaaagaggagcggaaggccatcttgaccaac
cagtacatgcagcgcctctccaccatgcggaccctgagcaaccccctcttgggctccttt
cagcagccttccagctacttcctgcctgccgtgccccagcctccagcccaggctgcatac
tatggctgtggcccagtgacacccacccagcctgcccccaggtggacgtcccagccacct
agaccttcctctatctaccctccaggtgcctcgatggttcggccaccagtgatgcctcgg
tgccccccggcccacatcagcagtgtcaggcaggcctccacccaggtgccacgcacggtg
ccccacacccagagagtggccaacattggtactcagaccacaggacccagtggggtagga
tgctgtacgccaggccggcctctcctgccatacaagtgttcctcagcagcacacagcacc
gatcaggtccaggagccggctgtgcacatcccgggacatgagcccctgactgcgtccatg
ctggctgcggcacccctgcatgagcaaaagcagatgattggggagcgtctctaccccctt
atccatgatgtccacacccagctggctggcaagatcacgggcatgctgctggagattgac
aactcggagctgttgctcatgctggagtctccagagtccctccatgccaagatagacgag
gcagtggccgtgctgcaggcacaccaggctgtggagcagccgaaggcgttcatgcattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (58)   

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