KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100412317
Entry
100412317         CDS       T03264                                 
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
  KO
K16498  protocadherin delta 1
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:cjc01009]
    100412317 (PCDH1)
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:cjc04515]
    100412317 (PCDH1)
Protein phosphatases and associated proteins [BR:cjc01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     100412317 (PCDH1)
Cell adhesion molecules [BR:cjc04515]
 Cadherins
  Protocadherins
   100412317 (PCDH1)
SSDB
Motif
Pfam: Cadherin Protocadherin Cadherin_2
Other DBs
NCBI-GeneID: 100412317
NCBI-ProteinID: XP_035143106
Position
2:complement(38334550..38367950)
AA seq 1237 aa
MDSGAGGRRCPEAALLILAPARMGPLRCSPGPRGQRLLLSSMLLAVLLLLAPSPGHATRV
VYKVLEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGL
RECQNQLPGEPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLAIPEN
TNIGSLFPIPLASDRDAGPNGVASYELQAGPEAQELFGLQVAEDQEEKQPQLIVMGNLDR
ERWDSYDLTIKVQDGGSPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVI
QVKANDSDQGANAEIEYTFHQAPEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAK
DRGTNPKSARAQVVVTVKDMNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVS
DRDEGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVD
SGNPPLSSTNSLKVQVVDVNDNAPVFTQSVTEVAFPENNKPGEVIAEVTASDADSGSNAE
LVYSLEPEPAAKGLFTISPETGEIQVKTSLDREQRDSYELKVVAADRGSPSLQGTATVLV
NVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENARVQLSVEQDNGDFVI
QNGTGTILSSLSFDREQQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAPYITAPSN
ASHRLLTPQTRLGETVSQVAAEDFDSGVNAELIYSIAGGNPYGLFQIGSHSGAITLEKEI
ERRHHGLHRLVVKVSDRGKPPRYGTALVHLYVNETLANRTLLDTLLGHSLDTPLDIDIAG
DPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPK
PSGKASKGNKSKGKKSKSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPP
GSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDY
SYRTNPPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLG
PLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSS
PSRRTKSSALKLSTFVPYQDRGGQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHD
SCKDSATLEEIPLTQTSDFPPAATPASAQTAKREIYL
NT seq 3714 nt   +upstreamnt  +downstreamnt
atggacagcggggcgggcggccggcgctgcccagaggcggccctcctgattctggcacct
gccaggatggggcccctgaggtgcagcccgggcccccgggggcaacggctactgctgtct
tccatgctgctagctgtgctgctcctgctggctccatccccaggccacgccactcgggta
gtatacaaggtgctggaggaacagccgcccaacaccctcatcgggagcctcgcagccgac
tatggttttccagatgtggggcacctgtacaagctagaggtgggtgccccataccttcgc
gtggatggcaagacaggtgacattttcaccaccgagacctccatcgaccgtgaggggctc
cgtgaatgccagaaccagctccctggtgagccctgcatcctggagtttgaggtgtctatc
acagaccttgtgcagaatggcagcccccggctgctggagggccagatagaagtacaagac
attaatgacaatacacctaactttgcctcaccagtcatcactctggccatccccgagaac
accaacatcggctcactcttccccatcccgctggcttcagaccgtgatgctggtcccaac
ggcgtggcatcctatgagctgcaggccggacctgaggcccaggagctatttgggctgcag
gtggcagaggaccaggaggagaagcaaccacagctcattgtgatgggcaacctggaccgt
gagcgctgggactcctatgacctcaccatcaaggtgcaggatggcggcagccccccacgt
gccagcagtgccctgctgcgtgtcaccgtgctggataccaatgacaatgcccccaaattt
gagcggccctcctatgaggctgaactatctgagaatagccccataggccactcggtcatc
caggtgaaggccaatgactcagaccaaggtgccaatgcagagattgaatacacgttccac
caggcacccgaagttgtgaggcgtcttcttcgactggacaggaacaccggacttatcact
gttcagggccccgtggaccgtgaggacttaagcaccctgcgcttctcagtgcttgctaag
gaccgaggcaccaaccccaagagtgcccgtgcccaggtggtggtgaccgtgaaggacatg
aatgacaatgcccccactattgagatccggggcataggactggtgacccatcaagatggg
atggctaacatctcagaggatgtggcagaggagacagctgtggccctggtgcaggtatct
gaccgagatgagggagagaatgcagctgtcacctgtgtggtggcaggtgatgtacccttc
cagctgcgccaggccagtgagacaggcagtgacagcaagaagaagtatttcctgcagacc
accaccccactggactatgagaaggtcaaagactacaccattgaaattgtggctgtggac
tctggcaaccccccactctccagcaccaactccctcaaggtgcaggtggtggatgtcaat
gacaacgcacctgtcttcactcagagtgtcactgaggtcgccttcccggaaaacaacaaa
cctggtgaagtgattgctgaggtcactgccagtgatgctgactctggctctaatgctgag
ctggtttactctctggagcctgagccggctgcgaagggcctcttcaccatttcacctgag
actggagagatccaggtgaagacatccctggatcgggaacagcgggacagctatgagttg
aaggtggtggcagctgaccggggcagccccagcctccaaggcacagccactgtccttgtc
aatgtgcttgactgcaatgacaatgaccccaaatttatgctgagtggctacaacttctca
gtgatggagaacatgccagcactgagtccagtgggcatggtgactgtcattgatggagac
aagggggagaatgcccgggtgcagctctcagtggagcaggacaatggtgactttgttatc
cagaatggcacaggcaccatcctctccagcctgagcttcgatcgagagcaacaaagcacc
tacaccttccagctgaaggcagtggatggtggcgtcccacctcgctcagcttatgttggt
gtcaccatcaatgtgctagacgagaatgacaatgcaccctatatcactgctccttctaat
gcctctcaccggctgctgaccccccagacacgtcttggtgagacggtcagccaagtggca
gccgaggactttgactctggtgtcaacgctgagctgatctacagtatcgcaggtggcaac
ccttacggactcttccagattggatcacattcaggtgccatcaccctggagaaggagatt
gagcggcgccaccatgggctacaccgcctggtggttaaggtcagtgaccgcggcaagccc
ccacgctatggcacagccttggtccacctttatgtcaatgagactctggccaaccgcacg
ctgctggacaccctcctgggccacagcctggacacgccactggatattgacatcgctggg
gatccagaatacgagcgctccaagcagcgtggcaacattctctttggtgtggtggctggt
gtggtggccgtggccttgctcattgccctggcggttcttgtgcgctactgccggcagcgg
gaggccaagagtggttaccaggctggtaaaaaggagaccaaggacctgtacgcccccaag
cccagtggcaaggcctccaagggaaacaaaagcaaaggcaagaagagcaagtccccgaag
cctgtgaagccagtggaggacgaggatgaggctgggctacagaagtccctcaagttcaac
ctgatgagtgacgcccctggggacagtccccgaatccacctgcccctcaactacccacca
ggcagccctgacctaggtcgccactaccgctctaactccccactgccttccatccagctg
cagccccagtcaccctcggcctccaagaagcaccaggtggtacaggacctgccacctgca
aacacattcgtgggcaccggggacaccacgtccacgggctctgagcagtactccgactac
agctaccgaaccaacccccccaaataccccagcaagcagttacctcaccgccgcgtcacc
ttctcggccaccagccaggcccaggagctgcaggacccatcccagcacagttactatgat
agtggcctggaggagtctgagacaccatccagcaagtcatcctcggggcctcgactcggt
cccctggccctgcctgaggatcactatgagcgcaccacccctgacggcagcataggagag
atggagcaccccgagaatgaccttcgccctttgcctgatgtcgccatgacaggcacatgt
acccgggagtgcagtgagtttggccactctgacacatgctggatgcctggccagtcatct
cccagccgccggaccaagagcagcgccctcaaactctccaccttcgtgccttaccaggac
cgaggagggcaggagcctgcgggcgccggcagccccagtcccccggaagaccggaacacc
aaaacggcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagccatgat
tcctgcaaggactcggccaccttggaggaaatccccctgacccagacctcggacttccca
cccgcagccacaccggcatctgcccagacggccaagcgcgagatctacctgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (8)   
   RefSeq(nuc) (4)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (33)   

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