KEGG   Campylobacter jejuni subsp. doylei 269.97: JJD26997_1083
Entry
JJD26997_1083     CDS       T00573                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cjd  Campylobacter jejuni subsp. doylei 269.97
Pathway
cjd03030  DNA replication
cjd03410  Base excision repair
cjd03420  Nucleotide excision repair
cjd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cjd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    JJD26997_1083 (ligA)
   03410 Base excision repair
    JJD26997_1083 (ligA)
   03420 Nucleotide excision repair
    JJD26997_1083 (ligA)
   03430 Mismatch repair
    JJD26997_1083 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cjd03032]
    JJD26997_1083 (ligA)
   03400 DNA repair and recombination proteins [BR:cjd03400]
    JJD26997_1083 (ligA)
Enzymes [BR:cjd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     JJD26997_1083 (ligA)
DNA replication proteins [BR:cjd03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     JJD26997_1083 (ligA)
DNA repair and recombination proteins [BR:cjd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     JJD26997_1083 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     JJD26997_1083 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     JJD26997_1083 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      JJD26997_1083 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 PTCB-BRCT BRCT_2 N-glycanase_N RPA_interact_C DNA_ligase_ZBD
Other DBs
NCBI-ProteinID: ABS44642
UniProt: A7H3U4
Position
complement(955298..957241)
AA seq 647 aa
MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEVSKDSPTQKI
APTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENG
KLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKKRIEIRGEVVILKDDFEKINEKRALL
NQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTKHSEVMQFVRDLGFLK
DDFIKLCANLDEVLKAYDELLTLREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAF
KFPALEKTTRLIGINLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARLDVKIND
FVSVIRSGDVIPKITKVFKERREGLEMEISHPKLCPTCQSELLDEGTLIKCQNIDCEDRL
VNSIIHFVSKKCLNIDGLGENIVELLYKHKKITTLESIFHLKFSDFEGLEGFKEKKINNL
LNAIEQARECELFRFITALGIEHIGEVAAKKLSLSFGKEWHKQSFEAYVNLEGFGEQMAL
SLCEFTRVNHTRIDEFYKLLNLKIEKLEVKSDSVIFGKTFVITGTLSRPRDEFKALIENL
GGKVSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE
NT seq 1944 nt   +upstreamnt  +downstreamnt
atgaaaaaagaagagtatttagaaaaagttgctttagcaaatttgtggatgagagcatat
tatgaaaaagatgaacccttggctagtgatgaagaatacgatgctttaatcagagaatta
agagtttttgaagaacaaaataaagatgaagtttcaaaagactctccaacgcaaaaaata
gctcctaccatacaaagcgagtttaaaaaaatagctcatttaaagcgtatgtggtcgatg
gaagatgtatttgatgagagtgagcttagggcttgggcaaaacgcgcaaaatgtgaaaaa
aacttttttatagagcctaaatttgatggagcgagtttaaatttgctttatgaaaatggt
aaattagtaagcggtgccactaggggcgatggcgaagtgggtgaggatataacgcttaat
gtttttgagatagaaaatatacctaaaaatatagcctataaaaaaaggatagaaattcgt
ggagaggtagtgattttaaaagatgattttgaaaaaattaacgaaaaaagagccctttta
aatcaaagtttatttgctaatccacgcaatgctgcaagtgggagtttaaggcagcttgat
acaagtatcaccaaagaaagaaatttgaaattttatccttggggagtaggggaaaatacc
ttaaatttcaccaaacacagtgaggtgatgcaatttgttagagatcttggttttttaaaa
gatgattttattaaactttgtgctaatttagacgaggttttaaaagcttatgatgagctt
ttaactttaagagaaaaaaagcctatgatgatggatggtatggttgtaagagttgatgat
cttgcactttgtgaagaactaggctatacggtaaaatttccaaaatttatggcagctttt
aaatttcctgcacttgaaaaaaccacgcgtttaatagggataaatttacaagttggaaga
agtggggtgatcactcctgtggcggttttagagcctgtaaatttagatggggttgtagta
aaatcagccacacttcataattttgatgagattgcaagacttgatgttaaaatcaatgat
tttgtaagcgtgataagaagtggtgatgttatccctaaaatcactaaggtttttaaagag
cgtagagaaggtttagagatggaaatttcacatcctaagctttgtcctacttgccaaagt
gagcttttggatgaaggaactttaataaaatgtcaaaatatagactgtgaagatagactt
gtaaattctatcattcattttgtttctaaaaaatgtcttaatatcgacggacttggagaa
aatatagtagagcttttatacaagcacaaaaaaatcactacgcttgagagtatttttcat
ttaaaatttagtgattttgaaggtttggaaggctttaaagaaaagaaaatcaacaatctt
ttaaatgccatagaacaagccagagaatgcgaactttttcgttttatcacggctttaggg
atagagcatattggcgaggttgcggctaaaaaattaagcttaagttttggtaaagaatgg
cacaagcaaagctttgaagcttatgttaatttagaaggttttggtgagcaaatggcttta
agtctttgtgaatttacgcgtgttaatcatacaagaattgatgagttttacaagctttta
aatttaaaaatagaaaaacttgaagttaaaagcgatagtgtgatttttggtaaaactttt
gtgattacaggtactctttcacgcccaagagatgagtttaaggctttgatagaaaatctt
gggggtaaagtaagtggctcagtttctaaaaagactgactatgtgctttttggagaagag
gcaggttctaagcttagcaaggctaaagagcttgaagtaaaatgtatagatgaaagtgct
tttaatgagcttgttaaagaatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (30)   

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