KEGG   Campylobacter jejuni subsp. jejuni 81-176: CJJ81176_0509
Entry
CJJ81176_0509     CDS       T00461                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
cjj  Campylobacter jejuni subsp. jejuni 81-176
Pathway
cjj03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cjj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CJJ81176_0509 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cjj03021]
    CJJ81176_0509 (rpoB)
   03400 DNA repair and recombination proteins [BR:cjj03400]
    CJJ81176_0509 (rpoB)
Enzymes [BR:cjj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CJJ81176_0509 (rpoB)
Transcription machinery [BR:cjj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CJJ81176_0509 (rpoB)
DNA repair and recombination proteins [BR:cjj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CJJ81176_0509 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RnfC_N
Other DBs
NCBI-ProteinID: EAQ73187
UniProt: A1VYJ4
Position
440665..444801
AA seq 1378 aa
MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLDNGESGIEKVFKSIFPI
HDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKD
IKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVANKLVYTAQII
PDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKF
LTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYL
ANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSFDIANDLANGVDAAIINSFAQDGETLK
LLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH
KLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLG
LAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVT
HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG
FVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILA
RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGME
QIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHP
IVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFT
SVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSP
KGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSY
DKEKMALEKEHHDRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADISELEKI
NRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVK
VYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQ
ILESHLGLIGLRLGDQIQEIFDRRQKDFLKELRAKMLEICSIPRLASEKEFIKSLSDEEL
LNYARDWSKGVKFATPVFEGVNIEEFSKLFEMAKIDMDGKTELYDGRTGEKIAERVHVGC
MYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
NT seq 4137 nt   +upstreamnt  +downstreamnt
atgtgcgatatgttagataataaattaggaaatcgtttaagagtagacttctcaaacatt
tcaaaacaaatagaaatcccaaatcttctacaattacaaaaaaagagttttgattatttt
ttaaatcttgataatggtgaaagtggtatagaaaaagtttttaaatcaatttttcctatt
catgatccgcaaaatagattgagtcttgaatatgttagtagtgaaataggcaagccaaaa
tataccattcgcgaatgcatggaaagaggtttgacttattctgtaaatttaaaaatgaaa
atccgtcttactctgcatgaaaaagatgaaaaaacaggggaaaaagttggcgtaaaagat
attaaagaacaagaaatttatatccgcgaaattcctttaatgacagatcgtgtatctttt
atcattaatggggttgagagggtggttgtaaatcaattacatagaagccctggtgttatt
tttaaagaagaagaaagctcaacggttgcaaataagcttgtttatacagcacaaattatt
cctgatcgtggttcgtggctttattttgaatacgatgccaaagatgttttgtatgtaaga
atcaacaagcgtagaaaagttcctgtaactatgctttttagagctttagggtataaaaaa
caagatattattaagttgttttatcctattcagactatacatgtgaaaaaagataaattt
ttaacagaatttaatccaaatgattttatggatagaatagaatatgatattaaagatgaa
aaaggaaaaatcgttcatcaagctggaaaaagacttacaaagaaaaaagcagaacagctt
attaaagacggtttaaaatggatagaatatcctgtagaaattttacttaatcgttattta
gcaaatcctattattgataaagaaagtggagaggttttatttgattctttaactttgtta
gatgaaagtaagcttgctaagattaaagagcaaaaaagttttgatatagcaaatgacttg
gctaatggcgttgatgcagcgattattaactcctttgctcaagatggagaaactctaaaa
cttcttaaacaaagtgaaaatatcgatgatgaaaatgatttagctgcgattagaatttac
aaagttatgcgcccaggtgaacctgtggtaaaagatgcagcgaaggcttttgtaaatgat
ttattcttcaatcctgaaagatacgatcttaccaaggtaggtcgtatgaaaatgaaccat
aagttaggtcttgaagtgcctgagtatgttactgttttgactaatgaagatattattaaa
actgcaaaatatttaattaaagtaaaaaatggtaaaggacatattgatgatagagatcat
ttaggaaatcgtcgtatccgttctataggtgaacttttagccaatgaacttcatttaggt
cttgcaaaaatgcaaaaggcgatcagagataaatttacttctttaaatgcggatcttgat
aaagtaatgccttatgatttaatcaatcctaaaatgattactacaactatcattgaattt
tttacaggaggtcagctttcgcaatttatggatcaaaccaaccctttaagtgaggttact
cataagcgtcgtttgtcagcgcttggtgaaggtgggcttgtaaaagaaagagcaggtttt
gaagtgcgtgatgttcacgcgacacattatggtagaatttgtccagttgaaacacctgaa
ggtcaaaatattggtttgattaacactctttctacttatgcaaaagtaaatgaacttggc
tttgttgaagcaccatatagaaaagttgtaaatggtaaagtgactaatgaagttgtttat
cttacagcaacacaagaagaaggcttatttatcgcaccagcttcaactaaggttgatgct
aaaggcaatatagtagaagaatttgttgaggctagacaagatggtgaaactatacttgca
agacgcgaagaagtgcaattaatcgatctttgctcaggtatggttgttggggttgcggct
tctttgattccgtttttagagcacgatgatgcaaacagagcactaatgggttcaaacatg
caacgtcaagctgtgccacttcttactgcttcagctccgatagtaggaacaggtatggaa
caaattattgcgcgtgatgcttgggaagctgttaaagcaaagcgtggcggtgtggttgag
aaagtggataataaaagcattttcattttaggtgaagatgataaaggtccatttattgac
cattatactatggagaaaaatttaagaaccaatcaaaatacaaattatattcaacatcct
attgttaaaaaaggtgatatagtaaaagcaggacaaattatcgcagatggtccttctatg
gatcaaggcgaacttgctataggtaaaaatgctttaatcgcttttatgccttggaatggt
tataactatgaggatgctatagttgtaagtgagagaattattcgtgaagatacctttaca
agcgtgcacatttatgaaaaagaaattgaagcaagagaactaaaagacggcatagaagaa
attaccaaagatatcccaaatgtaaaagaagaagatgttgcacatcttgatgagagcggt
attgcaaaaattggcacccatatcaaaccaggtatgattttggtgggtaaggtttctcca
aaaggtgaggttaaaccaactcctgaagaaagacttttaagagctatttttggggaaaaa
gcaggacatgttgtgaataaatccctttatgcaaccgcttctttagagggtgttgttgtg
gatgttaaaattttcactaaaaaaggctatgaaaaagatgatcgcgcaataaaatcttat
gataaagaaaaaatggctttagaaaaagaacatcatgatagacttttgatgatggataga
gaagaaatgcttcgtgtttgtgctcttctttccaaagcccctttaaatagtgatcaaaaa
attggagataaaaattataaaaaaggacaaaccgcagatattagcgaacttgaaaaaatc
aatcgttttactttaacaactttgattaaagcttattctaaagagattcaaaaagaatac
gatgatttaaaaaatcatttccaaaatgagaagaaaaaattaaaagcagaacacgatgaa
aagcttgaaattttagaaaaagatgatattttaccaagtggggtaattaagcttgttaaa
gtttatattgctacaaagagaaagcttaaagtcggtgataaaatggcaggacgtcacgga
aacaaaggtatagtttcaactatagttcctgaagtggatatgccttatttaccaaatggt
aaaagtgtggatattgcacttaatccacttggcgttccaagtcgtatgaatataggccaa
attttagaaagccatttgggtttaattggacttagacttggagatcagattcaagaaatt
tttgacagaaggcaaaaagattttcttaaagaattaagagcaaaaatgcttgaaatttgt
tctattccaagacttgcaagcgaaaaagaatttattaaaagcttaagcgatgaagagctt
ttaaactatgctagagactggagtaaaggagttaaatttgctactcctgtttttgaaggt
gtaaatatagaagaatttagcaagctttttgaaatggccaagatagatatggacggcaaa
acagaactttatgatggacgcacgggtgagaaaatcgcagagcgtgttcatgtaggatgt
atgtatatgctaaaactccaccacttggttgatgagaaagttcacgcaagaagtacagga
ccttacagcttagttacccaacaacctgtgggtggtaaagcactctttgggggacaaaga
tttggggagatggaagtttgggcacttgaagcttatggagcggctcatactttaagagaa
atgttaactatcaaatcagacgatgtagaaggtagatttagtgcttataaagcattgaca
aaaggtgaaaatgttccagcaacaggaattcctgaaacattttttgtattaaccaatgag
cttaaatctcttgctttagatgttgagatttttgataaggatgaagataatgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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