KEGG T04297: 107309772

Coturnix japonica (Japanese quail): 107309772

Entry

107309772         CDS       T04297

Name

(RefSeq) collagen alpha-1(XV) chain-like

K08135

collagen type XV alpha

Organism

cjo Coturnix japonica (Japanese quail)

Brite

KEGG Orthology (KO) [BR:cjo00001]
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:cjo00535]
    107309772
Proteoglycans [BR:cjo00535]
Extracellular matrix (ECM) proteoglycans
  Basement membrane proteoglycans
   107309772

SSDB

Motif

Pfam:

Endostatin Collagen Collagen_trimer Laminin_G_3 3keto-disac_hyd Laminin_G_2

Other DBs

NCBI-GeneID:

107309772

NCBI-ProteinID:

XP_032298423

Position

2:complement(72547059..72637899)

AA seq 1133 aa
MLSCHSWWTWDVLLLFLGLSIHACSAAQVIEERGSKEHLDLTELIGVPLPPSVYFVTGYG
GFPAYSFGADANIGRLTSAIIPSPFYRDFAIVVTVKPNSDHGGVLFAITDAFQKTIYLGI
RLSPVDESTQRIIMYYTEPGSSISREVASFKVPVMTNRWNRFTVTVQGNNIALFMDCEEY
QRVQFQRSDRALVFESGSGIFVGNAGATGLEKFTGSIQHLTIRSDPRGNEDHCEDDDPDA
SGDFSGNGSIQENEDISEVQEELVPPHLLIRPEDSLAEAVEAPPTILSYLKENDFSGHHS
AEETSEPAKIKEQDSVIVETGQSNSESTALMQEILREEDGSGANVLLGVSREKIRMKPEE
LGSGSADRETEILKGSPGLHGIPGKPAPDSDVGPPESPEEDGSAGELGPEGPQGIPGLDG
VVGPPGQKGEKGERGLPGSAGAKGDNGVTGSVGPKGEAGANGSPGKPGPPGPPGPPGPPG
PTGVNYNLGSKRGPITEEPGIAGYPGGVGPKGEKGDPGPQGEPGQDGNDIVGPPGPPGPP
GPIIAIPEQLLNDTKGILNFTTIEKLLGPPGPDGKPGLPGFPGPRGPKGDIGLPGLKGLK
GQQGEKGEPGAIIAADGSLTELLGRKGQKGEAGVVGPMGPMGPIGPAGPKGELGFPGRPG
RPGLNGLKGAKGEQGEALNGIPGLPGPPGPPGPPGRVVHIKGAVFPVSPRPHCKNIVSNI
YPGNQKVLDAHGAKGNEDCWSLRNSVDLKGEKGNRGAPGPPGPPLPPSHFSHFINSIKGE
KGDNGVKGEKGEPNGGFYLTGPPGPPGRPGLVGPKGDSVVGPRGPPGLPGLPGLPGYGKI
GPPGPPGPPGPPAIYGSAAMPGPPGPPGEPGPPVTRNLVTTFQNIEGMLEKVHLVTEGTL
IYLRETSDVFIRVRNGWRKLQLSELIPVPDESLPPPAVSSYGFQSLPVLNPISDTNNGKP
ALHLVALNLPLSGDMRADFHCFQQAQQAGLKTTYRAFLSSHLQDLVAVVRKTDRYNLPIV
NLKGETLFNNWESIFNGNGGQFNIHVPIYSFDGRNVMTDPLWPQKIIWHGSTTNGIRLVS
NYCEAWHTADLAAMGQASPLKMGKLLDQKAYGCNNQFIVLCIENSFVSDPQGK

NT seq 3402 nt +upstreamnt +downstreamnt
atgctgtcatgtcattcctggtggacctgggatgtgctactactgttcttaggcttgtca
atccatgcttgttcagcagctcaggtcatagaagaacgaggctcaaaagaacatcttgat
ctcacagagttaataggagttccactccctccttctgtctactttgtcactggctacgga
ggttttccagcgtatagctttggtgcagatgccaacattggtcgattgacaagtgctata
ataccatcgcctttctatagagattttgcaattgtagttacagtgaaaccaaacagcgat
catggaggagtgctatttgcaataacagatgccttccagaaaactatttacttgggaatt
agactttcaccagttgatgagagcacccagagaataattatgtattacactgagcctggc
tctagtatctcccgagaagtggcttcatttaaagtgccagtgatgactaataggtggaat
agattcacggtgactgttcagggaaataacattgctttgttcatggactgtgaagagtac
cagagagttcagtttcagaggtcggatcgagccttggtatttgaatctggctctggaata
tttgttggtaatgcaggagccacaggactggaaaagttcacaggctcaattcaacatctg
acaatcagatctgacccaagaggtaatgaagatcactgtgaagatgatgatccagatgct
tcaggggacttcagtggcaatggcagcattcaagaaaatgaagacatttctgaggtgcaa
gaagaacttgtgcctcctcaccttctcataaggcctgaagattcattggctgaggcagtg
gaagcacctccaaccatattatcttatttgaaagaaaacgatttctcaggacatcacagt
gcagaagaaacctctgaaccagctaaaattaaagaacaagactcagttattgtggaaact
ggacaaagcaacagcgaatctacagctctcatgcaggaaatcttaagagaagaagatggc
tctggtgctaatgtcttgctaggagtgagcagagagaagattagaatgaaacctgaagaa
ctgggctctggatccgctgatagagaaactgaaattttaaaaggcagcccaggattgcat
ggcatcccaggaaaaccagcccctgattcagatgtaggacctcctgagtcaccagaggaa
gacggatctgctggtgaactgggccctgaaggtccgcaaggtattcctgggcttgatgga
gtggttggcccaccaggacagaaaggagaaaagggtgagagaggtcttcctggatctgct
ggtgcaaagggtgataacggagttactggatcagtaggccctaaaggagaagccggcgct
aatggctctcctgggaaacctggaccccctgggcccccagggccccctggacctcctgga
cccacaggtgtaaactacaatttaggatctaagagaggcccaattacagaagaacctggc
attgctggatatcctggaggtgtgggtccaaaaggggagaagggtgacccaggacctcag
ggtgaaccggggcaggatgggaatgatattgtgggtccacctggaccaccaggaccacct
ggaccaatcatagccataccagagcaacttcttaatgatacaaaaggaattcttaacttc
acaacaattgaaaaactgcttgggcctcctggaccagatggtaagccaggtttaccagga
tttcctggcccaaggggaccgaagggtgacattggtttacctggattgaaaggactcaaa
ggacaacagggtgaaaaaggagaacctggagctatcattgctgctgatggatctttaact
gaattgttaggaagaaaaggacagaagggtgaagctggagtggtaggaccaatgggacca
atgggaccaatagggcctgctggacctaaaggagaacttggattcccaggacgcccaggc
cgcccaggactgaatgggctgaaaggtgcgaaaggtgaacaaggtgaagcattaaatggc
attcctggtttgccaggccctcctggacccccaggacctccaggacgtgtagttcacatc
aaaggagcagttttcccagtctctcctaggcctcattgcaagaatatagtgagcaatatt
taccctggaaatcaaaaagttcttgatgcccatggtgctaaaggaaatgaagattgctgg
agtctgcgcaattcagtggacttaaaaggagaaaagggaaacagaggtgctccaggacca
ccaggtccacctctacctccatcacatttcagccactttattaatagcataaagggtgaa
aaaggagacaatggtgtaaaaggagaaaaaggagaaccaaatggaggtttttacctgaca
ggaccacccggaccacctggaagaccaggattagttggacctaaaggggattcagttgtt
ggacccagaggacctccagggttgcctggcttacctggtttaccaggttatggaaaaatt
ggaccacctggcccaccaggcccaccaggaccccctgcaatatatggatcagccgcaatg
cctggaccaccaggtcctcctggagaaccagggccacctgtaaccaggaatctggttaca
acatttcaaaacattgaaggtatgttggaaaaggttcatttggtaacagaaggtacacta
atctatcttagagaaaccagcgatgtttttatccgtgttcgaaatggatggagaaaattg
cagctaagtgagctaattcctgtccctgatgagagccttcctcctccagctgtatcaagt
tatggatttcaatctcttccggtactgaatccaatatcagacacgaacaatggaaaacca
gcactgcacctggtggctttaaacttaccattgtctggtgacatgagagcagattttcac
tgttttcaacaggcccagcaagcaggtttgaagactacctatagggcctttctctcatca
catttgcaagatttggtcgcggttgtcagaaaaacagaccgatacaatttgccaatagta
aatcttaagggagaaacacttttcaacaattgggaatctatattcaatggaaatggtgga
caattcaacattcatgttccaatatactcctttgatgggaggaatgtcatgacagatcca
ctctggcctcaaaagataatatggcatggttcaactacaaatgggatccgactggtcagc
aactactgtgaagcctggcacacagctgatttggcagcaatgggacaagcatcaccactg
aagatgggaaaacttcttgatcagaaagcatatggctgtaataatcagtttattgttctt
tgtattgaaaacagttttgtatctgatccccagggaaaataa

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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