KEGG   Coturnix japonica (Japanese quail): 107314196
Entry
107314196         CDS       T04297                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
cjo  Coturnix japonica (Japanese quail)
Pathway
cjo03420  Nucleotide excision repair
cjo04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cjo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    107314196 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    107314196 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cjo04121]
    107314196 (DDB1)
   03400 DNA repair and recombination proteins [BR:cjo03400]
    107314196 (DDB1)
Ubiquitin system [BR:cjo04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     107314196 (DDB1)
DNA repair and recombination proteins [BR:cjo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      107314196 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      107314196 (DDB1)
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 107314196
NCBI-ProteinID: XP_015718677
Position
5:complement(271465..284993)
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
TAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDNIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHRE
MDNMLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALMSEWKEPNGKNISVASCNSNQVVVAVGRALYYLEIRPQELRQINCTEMEHEVAC
LDITPLGDTNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaattacgtcgtgacggcgcaaaagccgacggccgtgaatggctgcgttacc
gggcactttacctcagcagaggacctgaacctgctgatcgccaagaacacaaggctggag
atctatgtggtgacggctgaggggctgcggcctgtcaaggaggtgggcatgtatggcaag
acagccgtcatggagctcttccgccccaaaggcgagagcaaggatctgctctttatcctt
acggccaaatacaatgcctgcatcctggagtacaagcagaatggtgacaacattgacatt
atcacccgtgcccatggaaatgtgcaggatcgcattggtcgtccctcagagaccggcatc
attggcatcattgacccagagtgccggatgattggcctgcggctctatgatggcctcttc
aaggtcatccccctggaccgtgagaacaaggagctgaaggcttttaacatccgcctggag
gagctccaagtcatcgatgtcaagttcctctatggctgtcaggccccaaccatctgcttc
gtctatcaggaccctcagggtcgccatgtcaaaacatacgaggtttcgctgcgtgagaag
gagtttaacaaaggtccttggaagcaggagaatgttgaggccgaagcctccatggtcatt
gcagtgccagagccttttggaggtgcaatcatcattgggcaggagtccattacctaccac
aatggagataaatacctggctatagctccacccatcatcaagcaaagcacgattgtgtgc
cacaaccgcgtggatcccaatggctcccgttacttgctgggggacatggaagggcgcctc
ttcatgctgctcctggagaaggaggagcaaatggatggcacagtcaccctgaaggacttg
cgtgtggaactgcttggtgagacatccattgcagagtgcttgacctacctggacaatggt
gtggtgtttgttggctctcggcttggggattcccagcttgtgaagctcaacgtggacagc
aatgagcaaggctcctatgtagtggctatggagactttcaccaacctcggtcccatcgtt
gatatgtgtgtggtagatctggagagacaaggccaagggcagctggtcacatgctcaggt
gcctttaaagaggggtcactacggatcatccggaacggcattgggattcatgagcatgcc
agcattgaccttccaggaattaaaggcttgtggcccctgaggtcagattctcatcgtgag
atggacaatatgctggtgctgtcctttgttggtcagaccagggttcttatgttaaatgga
gaggaggtagaagaaacagagctcacagggtttgtggatgatcagcagaccttcttctgt
ggcaacgtggcacatcagcaattgatccagatcacctctgcctctgtgagactggtcagt
caggagcccaaagccctcatgagcgagtggaaagagcccaacgggaagaacatcagcgtg
gcttcctgcaacagcaatcaggtggtggtagctgtgggacgagccctctactacctggag
atccgacctcaggagctcaggcagatcaactgcacagaaatggagcacgaagttgcctgc
ctggacatcactcctttgggggacactaatggtatgtcccctctgtgtgcaattggactc
tggactgacatctctgcccgcatcctaaagctgccttcctttgaactgctgcacaaagag
atgctaggaggagaaattatccctcgctccatcctgatgacaaccttcgagagcagccat
taccttctgtgtgccctgggggacggtgctctcttctactttgggctcagccttgagaca
ggcttgctgagtgaccgtaagaaggtgacccttggcactcaacccactgtcctgaggact
ttccgttccctgtccaccaccaatgtgttcgcctgctctgatcgccccaccgtcatctac
agcagcaatcacaagctggtcttctccaatgtgaacctgaaggaggtgaactatatgtgt
cccctcaactcagatgggtaccctgacagcttagctttggctaacaacagtacgctgaca
atcggcaccattgatgagatccagaagctgcatatccgcacagttcccctctatgaatca
cccaggaagatctgctaccaagaggtctcacagtgttttggtgtgctctcaagtcgtatt
gaggtacaagacgccagtgggggcaccactgcactcagacccagcgccagcacccaggcc
ctgtctagcagtgtgagcaccagcaagctgttctccagcagcacagcaccacacgagacg
tcctttggagaggaggtggaggtgcacaacctgctcatcatcgatcagcacacttttgaa
gtgcttcatgctcaccagttcctacaaaatgaatatgcccttagcctggtctcctgcaag
cttggcaaagacccaaacacctacttcatcgtgggtactgccatggtgtatcctgaggag
gcagagccaaagcaaggccgcattgttgtcttccactactctgacggcaagctgcagagc
ctggctgagaaagaggtgaagggagctgtgtattccatggtggagttcaacgggaagctg
ttagccagcatcaacagcacggtgcgcctgtacgagtggacagccgagaaggagctgcgc
acagagtgcaaccattacaacaacatcatggctctctacctgaagaccaagggagacttc
atccttgtgggagatctgatgcggtctgtcctgctccttgcctacaagcccatggaagga
aactttgaagagattgcccgggatttcaatccaaactggatgagtgccgtagagatcctg
gatgacgacaacttcctgggagcagagaatgctttcaacctgtttgtgtgccagaaagac
agtgctgccacaactgacgaggagcgccagcacttgcaggaggtggggctgtcccacctg
ggagagtttgtcaacgtcttctgccacggctccctggtcatgcagaacctgggcgagaca
tccacgccaacacagggctccgttctcttcggcacagtcaatggcatgatagggctggta
acttcactgtcagagagctggtacaacctcctgctggacatgcaaaacaggctgaataaa
gtcatcaagagcgtgggcaaaatcgagcactccttctggagatcatttcacactgagcgc
aagacagagccagctacgggcttcattgatggcgacctgattgaaagcttcctggacatc
agcaggcccaagatgcaggaggtggtagcaaacctgcagattgacgatggcagtgggatg
aagagggaggccaccgtggacgacctgatcaagattgtggaggagctgacccgcatccac
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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