KEGG T04297: 107316416

Coturnix japonica (Japanese quail): 107316416

Entry

107316416         CDS       T04297

Symbol

COL5A2

Name

(RefSeq) collagen alpha-2(V) chain

K19721

collagen type V/XI/XXIV/XXVII, alpha

Organism

cjo Coturnix japonica (Japanese quail)

Pathway

cjo04820

Cytoskeleton in muscle cells

Brite

KEGG Orthology (KO) [BR:cjo00001]
09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    107316416 (COL5A2)
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:cjo00536]
    107316416 (COL5A2)
Glycosaminoglycan binding proteins [BR:cjo00536]
Heparan sulfate / Heparin
  Extracellular matrix molecules
   107316416 (COL5A2)

SSDB

Motif

Pfam:

Collagen COLFI VWC TILa Amnionless

Other DBs

NCBI-GeneID:

107316416

NCBI-ProteinID:

XP_015723324

Position

7:4559029..4658369

AA seq 1496 aa
MMATRAETRTFFILAALLGLLVAVKAQEEEDYDAGEDVEEVACTQNGQMYLNRDIWKPSP
CQICVCDNGAILCDEIQCQDVLECENPQVPPGECCPVCPHTTRDFDPTIGRGRKGQKGEP
GIVPPVSGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGIPGQPGDPGPPGH
PTHTGPDGLSRPFAAQMAGLDEKSGLGSQMGLMPGAVGPVGPRGPQGLQGKQGGAGPTGP
PGEPGDPGPMGPVGSRGPEGPPGKPGEDGEPGRPGQSGEPGFPGSPGPRGFPGAPGLPGL
KGHRGLKGLDGPKGEIGAAGAKGESGPTGAMGATGPLGPRGMPGERGRIGPQGAPGGRGQ
HGMPGKPGPMGPLGITGSPGFPGAPGMKGEAGPTGPRGPEGPQGQRGETGPQGPAGSQGL
PGTEGTDGSQGAKGPTGSPGTGGPPGLLGPPGSPGPQGSTGPPGIRGQPGDPGVPGFKGE
AGPKGEPGPQGAQGPIGPMGEEGKRGPRGDPGSVGPPGPVGERGAPGNRGFPGSDGLPGP
KGAQGERGPAGSSGPKGGQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGGPGEDGR
PGPAGSIGIRGQPGSMGISGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGP
SGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGVVGPLGPRGERGNPGE
RGEPGASGLAGEKGMAGGHGPDGPKGSPGPSGTPGDPGPPGLQGMPGERGIAGTPGPKGD
RGGIGEKGAEGTAGNDGARGLPGPIGPMGPAGSTGEKGEPGPRGLVGPPGSRGNPGSRGE
NGPTGAVGFAGPPGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPPGPSGVPGLKGG
RGTQGPPGATGFPGSAGRVGPPGPTGAPGPAGPIGEPGKEGPPGLRGDPGSHGRVGDRGP
TGPAGGPGDKGDAGDDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGK
QGPTGPPGDKGPPGPIGQSGATGPVGEAGPEGPAGNDGTPGRDGAVGERGDRGEPGPAGL
PGSPGGPGTPGPVGPPGDAGQRGETGSRGPVGPPGRAGKRGLPGPQGPRGDKGDNGDRGD
RGQKGHRGFTGLQGLPGPPGPIGEQGSPGIPGPFGPRGPPGPVGPSGKDGSPGPLGPIGP
PGVRGSVGEAGPEGPPGDPGPPGPPGPPGHLTAAIGDIMGHYDDAMADPLPEFTEDEAAP
DDHNKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHPSKKSGEYWIDPNQG
CVEDAIKVYCNMETGETCISANPSTIPRKTWWASRSSDSKPIWYGLDMNRGSQFVYGDTA
VTQMTFLRLLSKEASQNITYLCKNSVGYMDDQTKNLKKAVVLKGANDLEIKAEGNSRFRY
TVLHDSCSKRNGNVGKTVFEYRTQNVARLPIVDIAPVDVGSTDQEFGIEIGPVCFV

NT seq 4491 nt +upstreamnt +downstreamnt
atgatggcaaccagggcagaaacaagaacttttttcatccttgctgctttgttagggcta
cttgtagccgtaaaagcacaagaagaggaagattatgatgccggagaagatgttgaagag
gttgcctgcacacagaatggccagatgtacctgaacagggatatttggaagccctcacca
tgccagatttgtgtctgtgacaatggagctattctttgcgatgaaatccaatgtcaagac
gtgttggagtgtgagaaccctcaggtgcccccaggagagtgctgtccagtgtgtccccat
accacacgtgattttgatcctaccattggtagaggaagaaaggggcaaaaaggagaacct
ggaatagttccacctgtttcaggaatacggggacgccctggtcctgcaggacctcctggt
tcacaaggaccacgaggagaacgaggacctaagggaagaccgggtcctcgtggtcctcaa
gggatcgatggagagcctggtatccctggccagcctggtgaccctggtcctccagggcat
cctacccacacaggaccagatggactaagcaggccatttgcggctcagatggcaggactg
gatgaaaaatctggacttggtagtcagatgggattgatgcctggtgcagtgggtccagtt
ggtccaagaggtcctcaaggtctccaaggaaaacaaggtggtgctggccccacaggccct
cctggtgaacctggagatccaggacctatgggtccagttggttctcgtggaccagaaggg
cctccaggcaaacctggtgaagatggtgaacccggtagaccaggacagtctggtgagcct
ggatttcccggatctccagggcctcgaggctttcctggtgctccaggtcttccaggtctc
aagggtcacagggggttgaaaggtcttgatggtccaaaaggtgaaattggagctgctgga
gcaaagggagaatctggaccaacaggtgccatgggtgcaacaggtcctctaggacctaga
ggaatgccaggagaaagaggtcgaattggaccacagggtgcccctggtggacgtggtcag
catggcatgcccgggaagccagggccaatgggtccccttggcataactggttctccaggt
tttccaggtgctcctggtatgaagggagaagcaggtccaacaggtcctcgtggtcctgaa
ggcccccaaggacaaagaggtgaaacaggtccccaaggcccagctggatcgcaaggtctt
cctggtacggaagggacagatggctctcaaggtgccaagggcccaactggatctccaggc
actgggggcccccctggcttattaggtccacctggttccccaggaccccaaggcagtaca
ggcccacctggtattcgagggcagccgggagaccctggtgttccaggtttcaagggagaa
gcaggacccaaaggtgaaccaggcccacaaggtgcccagggtcccattggccccatgggt
gaagaagggaaaagaggccctcgaggtgatccagggtctgtcggtccaccaggtcctgtt
ggagagaggggtgctcctgggaaccgtggttttccaggttctgatggcttgcctggacca
aagggtgcccaaggagagcgtggtccagcaggttcttctggtcctaagggaggtcaggga
gatcctgggcgtcctggtgagcctggactcccaggtgcaaggggtttaactggaaaccca
ggcgttcaaggccctgaaggaaaacttggccccttgggtggccctggagaagatggacgt
cctggtcctgcgggttccataggaatcagaggtcagccaggcagcatgggcatttctggg
ccaaagggtagtagtggtgatcctggtaaacccggagaagcaggaaatgcaggtgttcca
ggacaaagaggagctcctggcaaagatggtgaagttggtccttctggtcctgttggccca
tcaggtctggcaggagaaagaggagaacaaggccctccaggtcctacagggtttcagggc
ttacctgggccaccaggtcctccaggtgaagggggaaagccaggtgatcagggtgttcct
ggagatcctggagtggttggtcctttgggccccaggggagaacgtggcaatccaggggaa
cggggagagccaggtgcgtcaggacttgcaggtgaaaagggtatggctggaggtcatggt
cctgatggtccaaagggaagtccaggccctagtgggacacctggtgatccaggcccgcca
ggtcttcagggtatgcctggagaaagagggattgctggaactcctggtccaaagggtgac
agaggtggtataggtgagaaaggtgctgaaggtactgctggaaatgatggggcaagaggt
cttcctggtccaataggcccaatgggtccagcagggtccactggagaaaagggtgaacca
ggtcctcgaggtctagtcggtcctcccggttctcgtggaaaccctggttctcgaggagaa
aatggcccaactggtgctgttggttttgctggtcctccgggccctgatggtcagccaggt
gtgaaaggtgaacctggggaacctggacagaaaggagatgctggatctccaggaccgcag
gggcttgctggatctcctggcccaccaggtccttcaggtgttcctggtttgaaaggtggt
cgaggaactcagggtccccctggtgctactggattcccaggatctgctggaagagttgga
cctcctggacctactggagctccagggcctgctgggcctattggtgagccaggaaaagaa
ggacctccgggtcttcgtggcgatcccggttctcatggtcgtgtgggtgatcgaggacca
actgggcccgctggtggtcctggagacaagggtgatgcaggggatgatggtcagccgggt
ccagatggccccccaggtccagcaggaactactggtcaaagaggtattgttggtatgcca
ggacagcgaggagaaagaggcatgccagggctgccaggtcctgcaggtacaccaggaaaa
caaggtcccacagggccacccggtgataaaggtcccccaggacctattggccaatcaggt
gccactggacctgtaggggaagctggtccagaaggacctgctggaaatgatggtactcca
ggacgagatggagctgttggagagcgtggtgatcgtggtgaacctggccctgcaggctta
cctggttctccaggaggtcctggaactccaggtcctgtcggccctccaggagatgcaggt
caaagaggtgaaactggttctcgagggccagtgggtcccccaggccgtgcaggaaaaaga
ggtttgcctggtcctcaggggcctcgtggtgacaaaggtgacaatggagatcgaggtgac
aggggccagaaaggacacagaggtttcactggtcttcaaggtcttcctggtcctcctggc
cctattggtgaacagggcagtcctggcattccaggcccgtttggtcctcggggtcctcca
ggtccggttggtccttcaggcaaagatggaagccctggaccactagggccaattgggcct
cctggtgttagaggaagtgtaggagaagctggacctgagggtccaccaggtgatcctggc
cctcctggtcccccaggccctccaggacacctcactgctgccatcggggacattatggga
cactatgatgacgctatggcagatccactaccagagtttactgaagatgaagcagctcct
gatgaccacaataaaacagacccaggagtccatgccacgctgaagtcactgagcagccag
attgagactatgcgcagcccagacggttcgaagaaacatccagcacggacttgcgatgac
ttgaagctgtgccacccgtccaagaagagcggtgaatattggattgaccctaatcaggga
tgcgttgaagatgctataaaagtttactgcaacatggaaacaggagagacctgcatttct
gcaaatccatcaactatcccacgtaaaacatggtgggccagcagatcatctgactcgaag
cccatttggtacggccttgatatgaacaggggatcacagtttgtgtacggggatacagct
gtcactcagatgacgttcctgcgtctcctgtcaaaggaagcttcccaaaatatcacttac
ctctgtaagaacagcgttgggtacatggatgaccaaactaagaacctgaagaaagctgtc
gttctgaaaggggccaatgacctggagatcaaggcggagggaaacagccgattcagatac
actgttcttcatgacagctgttctaaacgtaatggcaatgtgggcaagacggtctttgag
tacagaacgcagaacgtggcacgcttgcctatcgtagatatcgcaccagtggatgttggc
agcactgaccaggaatttggaattgaaattgggccggtttgttttgtgtaa

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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