KEGG   Coturnix japonica (Japanese quail): 107319608
Entry
107319608         CDS       T04297                                 
Symbol
USP4
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 4
  KO
K11835  ubiquitin carboxyl-terminal hydrolase 4/11 [EC:3.4.19.12]
Organism
cjo  Coturnix japonica (Japanese quail)
Brite
KEGG Orthology (KO) [BR:cjo00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:cjo01002]
    107319608 (USP4)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cjo04121]
    107319608 (USP4)
Enzymes [BR:cjo01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     107319608 (USP4)
Peptidases and inhibitors [BR:cjo01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   107319608 (USP4)
Ubiquitin system [BR:cjo04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    107319608 (USP4)
SSDB
Motif
Pfam: UCH DUSP Ubiquitin_3 UCH_1 USP7_C2 Choline_bind_1 USP7_ICP0_bdg
Other DBs
NCBI-GeneID: 107319608
NCBI-ProteinID: XP_015730072
Position
12:complement(1666389..1692780)
AA seq 964 aa
MAAAQGGGGTVRPELGPEPADSATVEPAAVEAAAPSPEEQRAELRPLMAASMRLGESWYV
LTSRWFGLWKRYVGYDRWDVAGVGDPNLFPGPIDNSCLLGDGETQSLKEHLIAQLDYVLV
PSSAWQKLVSWYGCIEGQQPIVRKVMEFGLYAKHCEVEVYPLELKLCESSSPSNVISCCF
SRRDSVATLVKEVRKLFKIPAEKDVRLWSSHFDGSYEQLSELGVTLEDANIYHGELVLIE
VRNGDGTWPQHPFLAKSSTATGRNFTTSTKPSASSYSTASATSVITNGDSSNSYGLSSSS
LGRGGSGFACNSYSSNRDSASLSQPGLCGLSNLGNTCFMNSALQCLSNTPPLTDYFLEDK
YEAEINHSNPLGMRGEIAEAYAELIKQIWSGRQSHVAPRMFKTQVGRFAPQFSGYQQQDS
QELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDSVVAKEAWENHRLRNDSIIVDIFHGL
FKSTLVCPKCSKVSVTFDPFCYLTLPLPLKRDRLLEVTLVYADPQRRPVQYRVVVPMMGA
ISDLCDSLSKLSGVPAEKMVVTDVYNHRFHKIFQADEGLNHIMPKDDIFVYEVCKPSEDG
SEYITLSVYFREKAARQSSSTSGTVLFGQPLLVSVPKHKLTVDHLYGVVLERISRYVKLP
VAEVYSAPCPDRGACNGSSSVAEGDIEEMEHQDDGQEGREKLAEVDSCPSEGCMQVEPTR
GLQPCKKQYFTFSLVNLYGTSEINSIVEGKLLKLNAFSTLAIDWDSETRRLLFDEQEAQA
FEKHASVLQPQKMKAVVALKDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPK
ILVVHLKRFSYSRYWRDKLDTVVEFPIRGLNMSEFVCDPRGSSYVYDLIAVSNHYGAMGV
GHYTAYAKNKVNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQRRNEEHVAPSPPQEECDG
MDTN
NT seq 2895 nt   +upstreamnt  +downstreamnt
atggcggcggcccagggaggcggtgggacggtgcggcccgagctgggcccggagccggcg
gactcggcgaccgtggaaccggcggcggtggaagcggcggctccgagcccagaggagcag
cgggccgagctgaggccgctgatggccgcgtccatgaggctgggggagtcctggtacgtg
ctgaccagccgctggttcgggctctggaagcgctacgtggggtacgacaggtgggacgtg
gccggagtgggagaccccaacctcttccctgggcccatcgacaactcgtgtctgctcgga
gatggggagactcagagcttaaaggagcatctcatcgcacagctggactacgtgctggtg
cccagcagcgcctggcagaagttggtttcgtggtatggctgcatcgagggccagcagccc
atcgtgaggaaagtgatggaatttggtctatatgcgaagcactgtgaagttgaagtttat
cctcttgagctgaagctgtgtgagagcagcagtccttccaacgtgatcagctgctgcttc
agcagaagagacagtgttgccactctcgtgaaagaggtacggaaactctttaaaatcccg
gctgagaaggatgtgaggttatggagcagccattttgatggctcttacgagcagctcagc
gagctgggtgtcactctggaagatgcaaacatctatcatggggagcttgtcctaatagaa
gtgagaaatggagatggcacgtggcctcagcatcctttccttgcaaagtcaagcactgca
actggcagaaactttactacctctacgaaaccttcagcaagttcttattccacagcatct
gccacatctgtcattactaacggcgatagcagcaactcctatggactgagcagctccagc
ctgggcaggggaggttctgggtttgcctgcaactcttacagcagcaacagggactctgct
tccctgtcccaacctggcctatgtggactcagtaaccttgggaatacctgcttcatgaat
tctgcattacagtgtctgagtaatacccctcctctgaccgactatttcctggaagataaa
tatgaagctgaaataaatcacagcaaccccttggggatgagaggagaaattgcagaagcc
tatgcagaactcattaaacagatttggtctgggagacagtctcatgtggccccacgcatg
tttaaaacacaggttggccggtttgctcctcagttttcaggataccaacagcaagattcc
caggagctcttggcttttcttctagatggcttgcatgaggatttgaatagagtgaagaag
aaaccttacttggagctgaaggatgccaatggcaggcctgattcggttgtagcaaaagaa
gcctgggagaaccacagactgaggaatgattctatcattgtggatatttttcatggtctt
ttcaagtctacccttgtttgtcccaaatgctctaaggtttctgtgacctttgatcccttc
tgttacttaactcttccactgcctttgaagagagatcgtctgctggaggttaccctggta
tatgcagacccacagcgcagacctgtccagtaccgggttgtggtgccaatgatgggggcc
atctcagatctctgcgattcactctccaaactttctggggttcctgcagaaaaaatggtg
gtgacagatgtgtacaaccatcggttccacaaaatcttccaggcggatgaaggtttaaat
catatcatgccaaaagatgacatctttgtatatgaagtctgcaagccaagtgaagatggc
tcagagtacattactttgtctgtttactttcgggaaaaggcagcgaggcaatccagcagc
acttcagggactgtgctctttggtcaaccactgctggtatctgtgccaaaacacaagctc
actgtggatcacttgtacggtgtcgttttggagcggatcagtcgctatgtgaaactccct
gtggcagaagtatactccgcaccttgtccagacagaggagcatgcaatggctccagcagt
gtggctgaaggtgacattgaagagatggagcatcaggatgatggccaggaaggcagggag
aagctggcagaagttgattcctgcccctctgagggctgcatgcaggttgagccaacgaga
ggcctgcagccttgtaagaagcagtatttcactttcagccttgtgaatttatacgggacc
tctgagataaactctattgtagaaggaaaactcttgaaattgaatgctttttctacgctt
gctattgactgggattctgaaacacggaggctgctctttgatgaacaggaggcacaggca
tttgaaaagcatgcaagtgtgttacaaccacagaagatgaaggcagtggtagcccttaaa
gactgcatagagctctttactacaatggaaactctgggtgaacacgacccttggtattgc
cctaactgtaagaagcatcagcaggccacaaagaagtttgacttgtggtcactgcccaag
attttggtagtgcatctaaaacgcttctcatacagcagatactggagggataaacttgac
actgttgttgaattccctatcaggggtttaaacatgtctgagtttgtctgtgacccaaga
ggaagctcatatgtctacgacctcattgcagtttccaatcactatggagccatgggagta
ggccactacactgcctatgcaaagaacaaggtgaatggcaagtggtactactttgatgac
agcagcgtgtcgttggcttcagaagaccaaatagtgacaaaagctgcctatgtgctgttt
tatcagcgccgaaacgaggaacatgttgccccatctcctccccaagaagagtgtgacggc
atggataccaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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