KEGG   Coturnix japonica (Japanese quail): 107325897
Entry
107325897         CDS       T04297                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cjo  Coturnix japonica (Japanese quail)
Pathway
cjo03030  DNA replication
cjo03410  Base excision repair
cjo03420  Nucleotide excision repair
cjo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cjo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107325897 (LIG1)
   03410 Base excision repair
    107325897 (LIG1)
   03420 Nucleotide excision repair
    107325897 (LIG1)
   03430 Mismatch repair
    107325897 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cjo03032]
    107325897 (LIG1)
   03400 DNA repair and recombination proteins [BR:cjo03400]
    107325897 (LIG1)
Enzymes [BR:cjo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107325897 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     107325897 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     107325897 (LIG1)
DNA replication proteins [BR:cjo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    107325897 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     107325897 (LIG1)
DNA repair and recombination proteins [BR:cjo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     107325897 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     107325897 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     107325897 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N mRNA_cap_enzyme PucR DNA_ligase_A_C
Other DBs
NCBI-GeneID: 107325897
NCBI-ProteinID: XP_015742645
Position
LGE64:416086..423070
AA seq 613 aa
MVPVPPTSPRAPSSHQPGDSDGDSNGDVAPPASKRCRQSPADQDKGPPPPHKAPAPNSHI
PVEPSQYDPSKSGYHPVQDACWGHGHSVPYLAVARTFERIEEASSRLKIIEILTNFLRSV
VALTPSELLPCLLLCLNRPGAAPEGLELGVGETLLTRALAQATGRQLAQIRSEAQDKGDL
GLVAESSRCTQRTVVPPAPLSANGVLGKLREMAAMSGNASSNKKIDIIKGLFVACRHSEA
RYLVRSLSGKLRIGLAEQSVLTALAHAVTLTPPGQEWPLAVVDAGQNMAPDARRAWLEER
SRILKQTFCELPDYAAIVPVLLEHGLEQLPKHCGITPGVPLKPMLAQPARCVRELLKRFE
EAAFTCEYKYDGERTQIHVLESGAVFIYSRNQENTTAKYPDLVQRIPKMLKPGVRSCILD
AEAVAWDKVTKQLQPFQVLMTRKRKDVDAADIKVQVCVYAFDLLYLNGEPLVREPLATRR
RLLRQSFEESEGEFLFATSMDTSNPDEISEFLDKAIKASCEGLMVKTLEVEATYEIAKRS
HKWLKLKKDYLDGLGDTLDLVVIGAYLGKGKRAGIYGGFLLACYDEESEEYQSICKVTTM
GSLWGPMWTLWGT
NT seq 1842 nt   +upstreamnt  +downstreamnt
atggtccctgtcccccctacatcccctcgtgctccctcctcacatcagccaggggacagt
gatggggacagtaatggggacgttgccccccccgcatccaagcgctgccgtcagtcacct
gctgaccaggacaagggacctcccccaccccataaagctccagcccccaacagccatata
ccggtggagccatcccagtatgaccccagtaagagtgggtaccacccagtgcaggatgcc
tgctgggggcatgggcacagtgtcccctacctggcggtggctcgtacctttgagcgcatt
gaggaggcttcatcccggctgaagatcattgagatcctcaccaacttcctacgctccgtg
gtggccctgaccccatctgaattactcccttgccttcttttgtgcctcaaccgtccggga
gccgcccctgaagggttggagctgggtgttggcgagaccctgctcacccgtgcccttgct
caggccactggtcgccagctggctcagatccgcagtgaagcacaagataaaggggatttg
gggttggtggccgaaagcagccgctgcacccaacgcacggtggtgccgccagccccattg
agcgccaacggtgtcctcggcaagctgcgggagatggccgccatgtcgggcaatgcgtct
tctaacaagaagatcgacatcatcaaagggctctttgtcgcctgtcggcactcagaggcg
cgatacctcgtccgatctctcagtggaaagctccgcattgggttggccgagcagtcggtg
ctcaccgcgctggcacacgccgtcactctcaccccaccagggcaagagtggccgctggct
gtggtggatgctgggcagaacatggcacctgatgcacgcagagcttggttggaggagcgg
agccggatcctcaagcagaccttctgtgaactgcctgactatgctgccattgtcccggtg
ctgctggagcacggcctggagcagctccccaagcattgtggcatcactccaggtgtcccc
ttgaaacccatgctggcccaacctgcccgctgcgtccgcgagctgctgaagcgctttgag
gaggccgcgttcacctgcgagtacaaatatgacggagaacgaacccagatccacgtcttg
gagagcggagccgtcttcatctacagccgcaatcaagagaacacaaccgccaagtatccc
gacctcgtccagcgcatccccaagatgctgaagcctggtgtgcgctcgtgcatcctggat
gcagaagcggtggcttgggacaaggtgacaaagcagctgcagcccttccaggtgctgatg
acgaggaagaggaaggatgtagatgctgctgacattaaggtgcaagtgtgcgtctacgcc
tttgatctgctgtacctcaatggggagccgctggtgcgggagcccttggccacgcggcgc
cggttgctgcgccagtcatttgaagaatccgagggcgaattcctctttgccacttcgatg
gacacctctaatcccgatgagatttcagagttcctggacaaagccattaaggcttcctgc
gagggtctcatggtgaagacactggaggtggaagccacctatgagattgctaagcggtcc
cacaagtggttgaagctgaagaaggattacctggatggccttggggacacgctggacctc
gtcgtcataggtgcctacctgggcaagggcaaacgtgcgggcatttatgggggattcctg
ctggcctgctatgatgaggagagtgaggaataccagagcatctgcaaggtgaccactatg
gggtccttatggggtcctatgtggacattatggggtacttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (7)   
   KEGG ENZYME (3)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (38)   

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