KEGG   Caldicellulosiruptor acetigenus I77R1B: Calkr_0606
Entry
Calkr_0606        CDS       T01356                                 
Name
(GenBank) histone family protein DNA-binding protein
  KO
K03530  DNA-binding protein HU-beta
Organism
cki  Caldicellulosiruptor acetigenus I77R1B
Brite
KEGG Orthology (KO) [BR:cki00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cki03032]
    Calkr_0606
   03036 Chromosome and associated proteins [BR:cki03036]
    Calkr_0606
   03400 DNA repair and recombination proteins [BR:cki03400]
    Calkr_0606
DNA replication proteins [BR:cki03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    Calkr_0606
Chromosome and associated proteins [BR:cki03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    Calkr_0606
DNA repair and recombination proteins [BR:cki03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      Calkr_0606
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HU-CCDC81_euk_2 HU-CCDC81_euk_1 HU-DNA_bdg DUF2267 DUF4836
Other DBs
NCBI-ProteinID: ADQ40151
UniProt: E4SA74
Position
659421..659696
AA seq 91 aa
MNKTDLISAMAEKSGLTKKDAEKALNAFVDAVTEALSKGEKVQLVGFGSFEVRERAERVG
RNPQTQEEIKIPATKVPVFKAGKMLKDAVAK
NT seq 276 nt   +upstreamnt  +downstreamnt
atgaacaaaacagatttgatttcggcaatggcagagaagagtgggcttacaaagaaggat
gctgaaaaggcactaaatgcgtttgtagatgcggtaacagaggcactctctaagggggaa
aaggttcagcttgttggttttggttcatttgaggtaagagagagggcagaaagagttggt
agaaatcctcaaactcaagaagagataaagattccagcaacaaaggtacctgtgttcaaa
gcaggcaagatgttgaaagatgctgttgcaaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system