KEGG   Clostridium kluyveri DSM 555: CKL_3713
Entry
CKL_3713          CDS       T00564                                 
Name
(GenBank) Transcription termination factor rho
  KO
K03628  transcription termination factor Rho
Organism
ckl  Clostridium kluyveri DSM 555
Pathway
ckl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ckl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CKL_3713
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ckl03021]
    CKL_3713
   03019 Messenger RNA biogenesis [BR:ckl03019]
    CKL_3713
Transcription machinery [BR:ckl03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CKL_3713
Messenger RNA biogenesis [BR:ckl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CKL_3713
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N Spore_III_AA NACHT AAA_22 AAA_25 AAA AAA_14 DUF6775 SRP54
Other DBs
NCBI-ProteinID: EDK35698
UniProt: A5N3K2
Position
complement(3751420..3752874)
AA seq 484 aa
MKDKDINDMTVTELREVAKALQIKNISRYKKVELIEEIKKVSPAHIKKDGVILREKISPK
NESVGKCREVEHTSKLDEVKLQEPKIEESKINCGEKKEKLKEMINESDSARGVLEIIENN
NYGFLRGKNYLTGPDDIYVSPSQIRRFNLKTGDEVCGKVRTPKEGEKFKALLYVEKVNGE
NPERAVGRKPFETLTPIYPNQRLRLETNSSDLSTRLMDIISPIGKGQRGIIVAPPKAGKT
TLLKKIAQSISKNHPEIKLIVVLIDERPEEVTDMQRSINGEVIYSTFDEEPEHHTKVAYM
VLERTKRMVEQGQDVVILLDSITRLSRAYNLTITPTGRTLSGGLDPGALVMPKKFFGAAR
NIEEGGSLTILATALIETGSRMDDMIFEEFKGTGNMEVHLDRKLQERRIFPAINVYKSGT
RRDDLLFENRAEKETAFNIRKVLYDENNNQNILEQLISLMSKTKNNMQLINIANKMDIGK
YANK
NT seq 1455 nt   +upstreamnt  +downstreamnt
ttgaaggataaagatataaatgacatgacagttactgagttgagagaagttgccaaggct
ttgcaaataaagaatatatcgagatataaaaaagttgaattaattgaagaaataaaaaaa
gtttctccagcacacataaaaaaagatggagttattcttagagagaaaataagtcctaag
aatgaatcagtaggaaagtgcagggaagtagaacacacttcaaaattggatgaagtgaag
cttcaggaaccaaagatagaagaatcaaaaataaattgtggtgaaaaaaaagaaaaactt
aaagagatgataaatgaatcagatagtgcaaggggagtacttgagataattgaaaataat
aattatggatttttaagaggaaaaaattatttaacaggtcctgatgatatatatgtatct
ccttctcaaataagaagatttaacttaaaaactggagatgaagtctgtggaaaggtcaga
actccaaaagaaggagaaaaatttaaggcactattgtatgttgagaaagtaaatggagaa
aatccagaaagagcagttggaagaaaaccttttgaaacccttactcccatatatcccaat
caaagactaaggctagaaactaatagttcagatttatctactagacttatggacataatc
tcgcctataggaaaaggtcagagaggaattatagttgcccctcctaaagcaggtaaaact
actcttctaaaaaaaatagcccaaagtatttcaaaaaatcatccagaaataaaacttata
gttgtacttatagatgaaagaccggaagaagtcacagatatgcaaagatctataaacgga
gaagtgatttattcaacttttgatgaagaaccagaacatcatactaaagttgcttatatg
gtacttgagagaacaaagcgaatggtagaacaaggacaggatgtagtaatacttttagat
agtattaccaggctttcacgagcttataatttaactataactcccacagggagaactctt
tcaggaggattggatcctggagcacttgtaatgcctaaaaaattttttggtgcagcaaga
aatatagaagaaggaggaagccttaccatacttgccactgctcttattgaaactggaagc
aggatggatgatatgatatttgaggaatttaaaggaactggtaatatggaagttcacctg
gacaggaaacttcaggaaagaagaatattccctgctataaatgtatataaatcaggtaca
agaagagatgatttgctctttgaaaacagagcagaaaaagagactgcttttaatataaga
aaagtattatatgatgaaaataataatcaaaatattttagaacagttgataagtttaatg
tcaaaaactaagaataatatgcagcttattaacattgccaataaaatggatataggaaaa
tatgcaaataaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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