KEGG   Corynebacterium kroppenstedtii: ckrop_1256
Entry
ckrop_1256        CDS       T00896                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ckp  Corynebacterium kroppenstedtii
Pathway
ckp03030  DNA replication
ckp03410  Base excision repair
ckp03420  Nucleotide excision repair
ckp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ckp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ckrop_1256
   03410 Base excision repair
    ckrop_1256
   03420 Nucleotide excision repair
    ckrop_1256
   03430 Mismatch repair
    ckrop_1256
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ckp03032]
    ckrop_1256
   03400 DNA repair and recombination proteins [BR:ckp03400]
    ckrop_1256
Enzymes [BR:ckp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     ckrop_1256
DNA replication proteins [BR:ckp03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     ckrop_1256
DNA repair and recombination proteins [BR:ckp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     ckrop_1256
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ckrop_1256
   MMR (mismatch excision repair)
    DNA ligase
     ckrop_1256
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      ckrop_1256
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 HHH Auto_anti-p27 PTCB-BRCT OrfB_Zn_ribbon
Other DBs
NCBI-ProteinID: ACR18000
UniProt: C4LJJ5
Position
complement(1496004..1498064)
AA seq 686 aa
MSTDLQAQWNSLAADVRHHRDLYYNSEPVISDAEFDHLFKTLQDLEADHPELAKNGSPTE
EVGAPVPTPTETSSAEVTFAPVRHIERLYSLDNVFSKSELLEWLHRTPAPTYLTELKIDG
LSIDLVYRDGELVSAATRGDGLTGEDITPNARTISDIPQTISPTDEYPVPELVEVRGEVF
IGVEEFAVINADRVEQGRKPFANPRNAAAGSLRQKNPAETAKRNLSMICHGIGAREGWEP
STQHDAYTALAAWGFRVSPYTKRVTSADEVIAQMEYWGEHRHDATHEMDGLVVKVDDLAE
QEDLGETSRAPRWAIAYKYPPEEVVTTLRDIRIGIGRTGRATTYAVLDPVLVAGSTVARA
TLHNPSEVHDKGVLIGDRVTIRKAGEVIPEVLGPVADARDGSEKPFVFSTVCPECGTPLV
QAKADDADWRCPNTQGCPGQLLARMTYLAGRSAFDIDALGVSGIQDLIRSGALTNESELF
DLDESHLRLTSVFTTKAGKINATGKALLKNLEEAKSTELWRVIVALSIRHVGPTAARALA
TKYGSLEAIRSASEEELARIDGVGSIIAASLCSWFAVDWHIKIVDAWAAAGVRMEDDKQQ
AQPQTLEGTTVVVTGTLEDFTRDSAKEAIISRGGRAAGSVSKKTNYVVVGANAGSKETKA
RDLGLRILDEDGFKELLETGRVSDPA
NT seq 2061 nt   +upstreamnt  +downstreamnt
gtgagcaccgatcttcaagcacaatggaactcgcttgctgctgatgttcggcaccaccgt
gacctgtactacaacagtgagcccgtgatctcggatgccgaattcgatcaccttttcaag
accctccaagacctggaagcagaccatccggagctggccaagaatggttcaccgacggaa
gaggtgggcgcgcccgtcccgacccctaccgagaccagcagcgccgaagtaactttcgcc
ccggtacgtcacatcgagcggttgtacagcctggacaatgttttttcgaagtccgagttg
ctggagtggctgcatagaacccccgcgccgacgtacttgacggagttaaagatcgacggt
ttatccatcgacctggtgtatcgcgacggcgaactcgtgtccgccgcgactcgtggcgac
ggtctcaccggcgaagacatcaccccgaacgcccggacgatctcggatatcccccaaacg
atttctccgacggacgagtatcccgtgcccgagttggtggaagtgcgcggcgaagtgttc
attggtgtcgaagaattcgctgtgattaacgccgaccgcgtggagcaaggccggaagccc
tttgccaacccacgcaatgccgcagcgggatctctgcgtcaaaagaaccccgcggaaacc
gctaagcggaatctgtcgatgatctgccacgggatcggagcacgcgagggctgggagcct
tcgacccaacatgatgcgtacactgctttggccgcgtggggttttcgggtatccccgtac
accaagcgtgtgacctcggcagatgaggtcattgctcaaatggaatattggggcgagcac
cgtcacgacgcgacccacgaaatggacggtctagtcgtaaaagttgatgacctagctgag
caggaggatttgggcgagacctcgcgcgctccccggtgggctattgcctacaaatatccg
cccgaagaggtcgtgacgacgctgcgcgatattcgcatcggcatcggccggactggtcgc
gcgacgacgtacgccgtgctagatcccgtcctggtggctggctcaacggtcgctcgggcg
acgctacacaacccgtcggaggtccacgacaaaggtgtgttgatcggtgatagagtcacc
atccgcaaggctggcgaggtcattcccgaagtgctgggcccggtggcagatgcgcgtgat
gggtccgaaaagccgttcgtgttctctactgtctgccctgagtgtggcacgccgttggtg
caggccaaggcggatgacgccgattggagatgccctaatacacaagggtgccccggtcag
ttgctggctcggatgacgtatttggccggccggtctgctttcgatatcgatgctttgggc
gtgtcgggtatccaggacctcatcaggtcgggagctctgactaatgaatctgagctcttt
gacctcgatgaatcacatcttcgtttgacgtcggtgtttaccacgaaagcggggaagatc
aacgcgacggggaaggcgttgctgaaaaacctcgaggaagcgaagtccaccgagttatgg
cgggttatcgtggcgctttctattcgtcacgtgggccccacagctgctcgtgcgctggcc
acgaaatatggctctctcgaggccattcgcagcgcgtccgaggaggagctagctcgaatc
gatggagtcggcagcatcattgcggcgtcgttgtgctcatggtttgccgtcgattggcat
ataaaaattgtcgacgcctgggccgcggccggtgtccgcatggaggatgacaagcagcaa
gcccaaccgcagaccttggagggcacgaccgtcgtcgtcacgggtacgttggaagatttc
acgcgtgactcggcgaaggaagcgattatttcgcggggaggtcgcgcagcggggtcggtc
tccaagaaaacaaattatgttgtcgtcggggcgaatgctggatcgaaagagacgaaagcg
cgggacctcgggttgcgtattctcgacgaggacggttttaaagagcttttagaaacaggc
cgtgtgagtgaccctgcttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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