KEGG   Clostridium sp. BNL1100: Clo1100_0338
Entry
Clo1100_0338      CDS       T01708                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
clb  Clostridium sp. BNL1100
Pathway
clb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:clb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Clo1100_0338
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:clb03021]
    Clo1100_0338
   03400 DNA repair and recombination proteins [BR:clb03400]
    Clo1100_0338
Enzymes [BR:clb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Clo1100_0338
Transcription machinery [BR:clb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Clo1100_0338
DNA repair and recombination proteins [BR:clb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Clo1100_0338
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AEY64624
UniProt: H2JHI6
Position
374843..378583
AA seq 1246 aa
MVQPVKLGRNTRMSYSKMREVLEMPNLIEVQKNSYQWFLDEGLREVFRDISPITDYTGNL
ILDFVDYSLDDTPKYSVEECKERDTTYSAPLKAKVRLINKESGEVKEQEIFMGDFPLMTD
TGTFIINGAERVIVSQLVRSPGIYYSMKFDRVGKKLYSNTVIPNRGAWLEYETDSNDILS
VRIDRTRKLPLTVLLRALGYGTDFEITQLLGEDERLLATIQKDNAKTSEEGLLEIYKRLR
PGEPPTVDSARSLLNSLFFDPKRYDLAKFGRFKFNKKLAISNLISGQVAAENIVSAETGE
ILVTEGELIEREKAVEVQNSGVNIVYLSVEGKSIKVIGNNTVDIRAFVDFDVSDIGITER
VQYAVLKEILENTSGEEQIKKTLKERINDLIPKHITIEDIISSINYIINLDYGIGSIDDI
DHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDIDIVTPQALINIRPVAAAIKEF
FGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPE
GPNIGLIGSLSTYARVNEYGFIEAPYRKVDKKNRRVTNEIVYLTADVEDPFVVAQATEPL
DDDGTFVSNKVVARYRHEILEVESNKIDFMDVSPKQMVSVATAMIPFLENDDANRALMGS
NMQRQAVPLIKADSPIVGTGIEYKAARDSGVCVIAKNAGVIDKVSASEIVIKTNSGQKDT
YKLLKYMRSNQGTCLNQRPIVRKGEMIEKGEIIADGPSTNNGEIALGRNILIGFMTWEGY
NYEDAILINEKLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEEALKDLDDRGI
IRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIIVD
VKVFTRENGDELPPGVNQLVRCYIAQKRKISVGDKMAGRHGNKGVISRILPEEDMPFLPD
GTPLEIVLNPLGVPSRMNIGQVLEVHLGFAAKALGWKIATPVFDGATEEDIRDTLIQAGK
DPDGKTVLYDGRTGDPFDNRVTVGYMYYLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQ
FGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGIPESFK
VLIKELQSLALDVKVYSEEQEEIAIKEYVEDDLEELNVNIEGREDEVVLTNDFDNELRED
VLEEELEIDDLDIGSISTGDNLEEELTEELFADDDLSDDFEDDEDF
NT seq 3741 nt   +upstreamnt  +downstreamnt
atggtacaacccgtaaaattgggtagaaacaccaggatgagttattccaaaatgcgagaa
gtactggaaatgccaaatctgatagaggttcaaaagaactcatatcaatggtttttggat
gaaggacttcgtgaagttttcagagatatttccccgataacagattatactggaaacttg
atattggattttgtggattattcgcttgatgatacgccaaagtatagtgtcgaagaatgt
aaggaaagggacactacatactcagcccctctcaaggcgaaggtaagattaattaacaag
gagtctggagaagtaaaagagcaggaaatctttatgggtgattttcctcttatgacagac
acaggaacctttataattaatggtgcagagcgtgtaattgtcagccagttggtaaggtca
cctggtatttactattcaatgaagtttgaccgtgttggtaaaaagctgtactcaaacaca
gttattcctaacaggggagcatggcttgaatacgaaacagactcaaacgatatactttca
gtcagaatagacaggacaagaaaattgcctctaactgtactgctcagagcattagggtac
ggtactgactttgagattacgcaattgttgggtgaagatgaaagacttcttgcaacaata
caaaaggataatgcaaaaacttccgaagaaggcttacttgaaatatacaagagattaaga
cctggagaaccacctacagttgatagtgcaaggtctttgcttaacagtttgttttttgat
ccaaagagatatgatcttgctaaatttggtaggtttaagtttaataaaaagttagcaata
tcaaatctgatcagcgggcaggttgcagcagaaaatatcgtatcagccgagacaggtgag
atattagtaaccgaaggtgaattaattgaaagagaaaaggctgtagaagttcagaactcc
ggtgtaaacatagtatatctgtcagttgaaggtaaatctataaaagtcatcggaaacaat
actgttgatatacgtgcctttgtcgatttcgatgtatctgatataggtataaccgaaaga
gtacagtacgccgtgctaaaggaaattcttgaaaatacaagcggcgaagagcagataaag
aaaactcttaaagagagaatcaacgacttgattccaaagcatatcacaattgaggatata
atttcatcgataaattatattattaatcttgattacggaatcggatctatagacgatatt
gaccacttgggtaacagaagactccgttcggtgggagagttgcttcagaatcagttcaga
ataggtctctcaagaatggaaagagttgtaagagagagaatgactatacaggatattgat
atagttactcctcaggcattaataaatataagaccggttgcagctgctataaaagaattc
tttggaagcagccagctgtcacagtttatggatcagacaaatcctctagctgaattaaca
cacaagagaaggctcagtgccttaggacctggtggtttgagcagagagagagctggcttc
gaagtccgtgacgttcaccactctcactatggccgtatgtgcccaattgagacacctgaa
ggtccgaacatcggtttgataggttcattgagtacctatgcaagagttaatgagtacgga
tttatagaagcaccatacagaaaagtagataagaaaaacagaagagtaacaaatgaaata
gtataccttacagctgacgtagaagacccgttcgttgtggctcaggcaacagaacctctc
gacgatgatggtacttttgtttcaaataaggtagtagctcgttatagacatgaaatattg
gaagttgagagcaataaaattgacttcatggatgtttcgccaaagcagatggtatccgtt
gctacagcgatgataccgttccttgagaacgatgacgccaaccgtgcgctgatgggttcc
aacatgcagcgtcaggccgtaccgttgatcaaggcagattcgcctattgtaggtacaggt
attgagtacaaggcggcaagggattcaggagtttgtgttattgcaaaaaatgcaggtgta
atagataaagtatctgccagcgaaatagtaattaagactaacagcgggcaaaaagatacc
tataagttgctgaaatatatgcgttcaaaccaaggaacttgtttgaatcaaaggcctatt
gtaagaaaaggcgagatgatagaaaaaggtgaaattattgctgacggaccgtcaacaaat
aatggagaaatagctcttggtagaaacattctcataggatttatgacatgggaaggttac
aactacgaggatgctattcttataaatgaaaaactggttaaagaggatgtttatacatca
atacacatagaggaatatgaagcggagtcaagagacactaagctcggacctgaagaaatc
acgagagatattccaaatgtcggagaagaagcacttaaagaccttgatgacagaggaatt
atcagaataggtgctgaggttcgtgcaggagatatccttgttggtaaagttactccaaaa
ggagaaacagagcttacagcagaagagcgtttgctcagagcaatatttggagaaaaggcg
agagaagttcgtgatacatccctgagagtacctcatggagaatccggtattattgtcgat
gtcaaggtgtttactcgtgagaatggcgatgaattgccaccgggagtaaatcagcttgtt
agatgctatatcgctcagaagagaaagatttccgtcggtgataagatggcaggaagacac
ggtaataagggtgttatttcaagaatacttcctgaagaagatatgccgttcttgccggat
ggtacaccattggagatagttttgaatcctctcggcgttccatcacgtatgaatatcggt
caggtgcttgaagtgcatttaggatttgcagcaaaagcattgggctggaaaattgcaact
cctgtatttgatggagcaacagaggaagacatcagggatactcttattcaagcaggaaaa
gaccctgatggaaagacagtactttatgatggaagaacaggtgatccgtttgacaacagg
gtaaccgttggatatatgtactacctcaaactggctcacttggttgatgataagatacat
gcccgttctaccggaccatactcacttgtaacgcagcagccacttggtggtaaggcccag
ttcggtggtcagagattcggagaaatggaagtttgggctcttgaagcatacggagctgct
tatacattgcaggaaatacttacagttaagtctgatgacgttgtaggtagagttaagaca
tacgaatccatagttaagggcgagaacgttcccgaacctggaattcctgagtccttcaag
gttcttataaaagaacttcagagtttggcacttgatgttaaggtatattctgaagaacag
gaagaaattgcaataaaagagtatgttgaagatgatcttgaagaattgaatgttaacatc
gaaggcagagaagacgaagtagttctgacaaatgattttgacaacgaattaagagaagat
gttcttgaagaagagctggaaattgatgatctggatattgggtcaatcagtaccggtgat
aatcttgaagaagaattgactgaagaattatttgctgatgatgatctaagcgatgacttt
gaagacgacgaagatttttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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