KEGG   Clostridium sp. BNL1100: Clo1100_2524
Entry
Clo1100_2524      CDS       T01708                                 
Name
(GenBank) excinuclease ABC, A subunit
  KO
K03701  excinuclease ABC subunit A
Organism
clb  Clostridium sp. BNL1100
Pathway
clb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:clb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Clo1100_2524
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:clb03400]
    Clo1100_2524
DNA repair and recombination proteins [BR:clb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Clo1100_2524
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Clo1100_2524
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N RsgA_GTPase AAA_29 AAA_16 nSTAND1 nSTAND3 AAA_21 ATPase_2 AAA_22 Viral_helicase1 ATPase DnaJ_CXXCXGXG AAA_33 cobW Septin BCA_ABC_TP_C
Other DBs
NCBI-ProteinID: AEY66692
UniProt: H2JFJ8
Position
complement(2859322..2862153)
AA seq 943 aa
MIRDNIFIKGAREHNLKNVDVEIPRDKFVVITGLSGSGKSSLAFDTIYAEGQRRYVESLS
SYARQFLGQMDKPDVDYIDGLSPAISIDQKTTSRNPRSTVGTVTEIHDYLRLLYSRIGIP
HCPKCGKEIAQQTVDQMVDQIISFEEGTRIQLLAPVVRGRKGEYHKLIEDAKKDGFVRLR
VDGQIVDINDEIKLDKNKKHNIEIVVDRLVVRGDIQKRLVDSLETVLRLSGGIVIVDVIG
KEEILFSQNFACSDCGISIEELVPRMFSFNNPFGACQTCTGLGNLLKVDPELVIPDRSLS
LTNGAINVTGWNIESEDAYTRMIFNALAKHYKFELDTPFNKLPGEVVDIVLYGTKGEKIK
VDYEREYGKGSYMATFEGIINSIERRYHETQSESMKQYYEQFMSNNPCPDCKGARLKPES
LAVTVGGKNIHEVSYMSVADTKEFFDNIELSERDKMIANQILKEIAARIGFLVDVGLDYL
TLSRPAGTLSGGEAQRIRLATQIGSGLMGVLYILDEPSIGLHQRDNEKLLKTLNRLRNLG
NTLIVVEHDEDTMHAADHIIDMGPGAGIHGGHVVAKGTLDEILKCEDSLTGQYLSGRKKI
EVPQGRRKPNGKWLEIVGAKQNNLKNINAKIPLGVLTSVTGVSGSGKSTLINEILYNSLA
NQLYRAKAKPGNHETIKGLKNIDKVINIDQSPIGRTPRSNPATYTGVFDLIRDVYASTNE
AKMKGYKNGRFSFNIKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKY
KGKSISDVLNMTIEDALEFFKNIPKIQRKLQTLYDVGLGYVKVGQPSTTLSGGEAQRVKL
ATELSKRSTGNTLYILDEPTTGLHVADVHRLIDILHRLVDTGNSIVVIEHNLDVIKTSDY
IIDLGPEGGNKGGTIIAQGTPEEIAKVKESYTGQYLSKIIESK
NT seq 2832 nt   +upstreamnt  +downstreamnt
atgataagggataatatttttataaaaggtgcacgtgagcataacttaaaaaatgtagat
gttgagataccaagagataaatttgttgttataacagggttgagcggttcaggtaagtct
tctcttgcctttgatacaatttacgctgaaggtcagagaaggtatgttgaatcactctca
tcttacgcaaggcagtttcttggtcagatggacaagccggacgtagactatattgacggt
ttgtctccggcaatatcaatcgatcaaaagacaaccagcagaaaccccaggtctaccgta
ggaactgtaacagaaattcacgattacctcaggcttttgtactcgaggataggaattccc
cattgtccgaagtgtggcaaggagattgcacagcaaactgttgaccagatggtagaccag
ataatatcttttgaagaaggaaccaggatacagttgcttgctcctgtggtaagaggcaga
aaaggggaataccataagcttatagaggatgctaaaaaagatggttttgttaggctgcgt
gtcgacgggcaaatagtagatataaatgatgagattaaattagataaaaacaaaaagcat
aatattgaaatagttgttgacagacttgtagtacgtggagatatacagaaaagacttgtt
gattcattggaaacagtgcttcgcttaagcggtggtatagttattgtagatgtaatcggt
aaagaagagatactgttcagtcagaactttgcatgcagtgattgcggaatcagtatagaa
gaacttgtaccaaggatgttttcatttaacaatccgtttggagcatgccagacatgtacc
ggattagggaatcttctaaaggtagaccctgagcttgtcatacctgatagatcattgtca
cttacgaatggtgcaattaatgttacaggctggaatattgagagtgaggatgcatatacc
aggatgatattcaacgccctggcaaaacattacaaatttgaactggatacaccgtttaat
aagcttcccggagaagtagtagatatagtactttacggaacaaaaggcgaaaaaataaaa
gtagattacgaaagagaatatggtaaaggatcttatatggcaacattcgaaggaattatc
aattccattgaacgccgttaccatgaaacccagtcagaaagcatgaagcagtattatgaa
cagtttatgagcaacaacccgtgtccggattgtaaaggtgcaagattaaaaccagaaagt
cttgcggttacagtcggaggtaaaaatatacatgaagtatcttatatgtctgtggctgat
acaaaagaattctttgacaacattgagctaagtgaaagagataagatgatagcaaaccag
attttgaaagagattgcggccagaataggcttcctcgttgacgttggtctggactatctt
acactttcaagacctgctggtactttatccgggggagaggcacagagaataaggcttgct
actcagataggttctggcttgatgggagtactttatattctggatgagcccagtatagga
ctgcatcaaagagataatgaaaagctcctgaaaaccttaaacagacttaggaaccttgga
aatacgcttattgttgtagaacatgacgaagataccatgcatgcagcagaccatatcatt
gacatgggccccggagcaggaatccacggcggccatgttgttgctaagggaacactggac
gaaatactaaaatgtgaggattccctaacaggacaatatctcagcggacgcaaaaagata
gaagttccccaaggcagaagaaaaccaaatggaaaatggcttgaaattgtaggggcaaag
cagaataatctgaaaaacataaatgccaagattccacttggggtattgacatcagttaca
ggtgtttcggggtccggaaaaagcacattaattaacgaaatactgtataacagccttgca
aaccagttatacagagccaaagccaaaccgggcaatcatgaaacaataaaaggtttaaaa
aatattgacaaggttataaatattgaccaatcaccaatcggaagaactccaagatcaaat
ccggcaacctatacaggagtatttgatcttataagggatgtgtatgcttccaccaatgaa
gcaaagatgaagggatataaaaacggacgattcagctttaatataaaaggcggtaggtgt
gaagcctgcagtggagatggaattataaagattgaaatgcattttcttcctgacgtatat
gttccttgtgaggtttgtaagggaaaaaggtataaccgggagactctggaggttaagtac
aaaggtaaaagtatatcagatgtgcttaacatgactatagaagatgcactggaattcttt
aagaatatccccaaaatacaaagaaaattgcaaacattgtatgatgtaggattgggatat
gtcaaggttggtcagccttctacaactttgtcgggaggtgaagctcaaagagtaaagctt
gctacagagttatcaaagagaagtacgggaaatacgctgtatatattggatgagcctaca
accggacttcatgtagctgatgttcacagattgatagatattcttcacagactggtagat
acaggtaattcaatagtagttattgaacacaaccttgatgttataaagacttctgattat
ataattgatctggggcctgagggtggtaacaaaggaggtaccattatagcacagggtact
cctgaagaaattgcaaaagtaaaagaatcatatacaggacaatatcttagcaaaattata
gaaagtaagtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (19)   
   Pfam (19)   
All databases (27)   

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