KEGG   Clostridium sporogenes: CLSPO_c21830
Entry
CLSPO_c21830      CDS       T03905                                 
Symbol
helD1
Name
(GenBank) helicase IV
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
cld  Clostridium sporogenes
Pathway
cld03420  Nucleotide excision repair
cld03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cld00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CLSPO_c21830 (helD1)
   03430 Mismatch repair
    CLSPO_c21830 (helD1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cld03400]
    CLSPO_c21830 (helD1)
Enzymes [BR:cld01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CLSPO_c21830 (helD1)
DNA repair and recombination proteins [BR:cld03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CLSPO_c21830 (helD1)
   MMR (mismatch excision repair)
    Other MMR factors
     CLSPO_c21830 (helD1)
SSDB
Motif
Pfam: UvrD-helicase AAA_19 UvrD_C UvrD_C_2 PhoH DEAD SLFN-g3_helicase Viral_helicase1 AAA_30 AAA_14 ResIII nSTAND3 T2SSE AAA_16 AAA_11 Glyco_transf_21 NACHT
Other DBs
NCBI-ProteinID: AKC62903
UniProt: A0A7U4JPJ0
Position
complement(2439993..2442230)
AA seq 745 aa
MSINKSEWIVEMKWLENVLREVKRQLEEKRNFKDNFKKDAIETQRELWKNVGAVSVENGL
QHVVDFMQFINTMKIQKRSHEFERKLVDKYENMISSPYFARMDFKEDGIENVEKCYIGIS
NLINEDFDFIIYDWRAPISSMFYDYEIGNAYYKCPDGIINGKISMKRQYKISNGKIDYMF
DSNIKIDDEVLQDILSKSSDNKMKAIVTTIQREQNKAIRNEKYKNLIVQGPAGSGKTSVA
LHRIAYLLYKHRDIITAKNIVIFSPNNIFNDYISNVLPQLGEDNMLQTTFKEYMHKVLEE
IDSKEDYCEMMENIFGDKSERSYDTRIKSLKFKSSVDFAKLLKVYIEHLKKMSMDFGDIT
LGEETIISALEIQELFYKDYESLPLKRRLEKLRRRLLYLIEPYKKRLVDKTVKEMEESNE
ELDENDIVKVSKSLVDREIKPIINKVEEKTKFDLMDCYKSFYENLEGLLKMANIKYGNES
IREIKRYTLENLRAKKINYEDQIALLFIKGAVGDIPKTEEVKYVIIDEAQDYAPLQYEIF
NQLFNKANKTILGDISQSINPYMNVGSYNNVVNILKSEDTSTINLTKSYRSTMEITKFSR
KILNKEINDEYVKRSGDWPSLTGFLDEKDINKRIVEEVKVYKCHGHNSIGIITKNVDEAQ
RVYNYLRDRINVKMIVSEDDDYVNDILVIPAYLAKGLEFDVVIIYNASDLRYKDEEDRLL
LYTACTRALHVLDIFYLGNVSPLLK
NT seq 2238 nt   +upstreamnt  +downstreamnt
ttgtcaataaataaatctgaatggatagtagaaatgaaatggttagaaaatgtacttagg
gaggtaaaaagacaattagaagaaaagagaaacttcaaagataattttaaaaaagacgct
attgagactcaaagagaattatggaaaaatgttggagctgtttcagtggaaaatggttta
cagcatgttgtagatttcatgcaatttattaatactatgaagattcaaaagagaagccat
gagtttgaaagaaaactagttgataaatacgagaatatgatttcatctccttactttgca
agaatggattttaaggaagatggaatagaaaatgttgaaaagtgctatattggaatttct
aacttaattaatgaagattttgattttattatatatgattggagggctccaatttctagt
atgttttatgattatgaaattggaaatgcttattataaatgtcctgatggaattataaat
gggaaaatatcaatgaaaaggcaatataaaattagtaatggtaaaattgattatatgttt
gacagtaatataaaaatagatgatgaagtgttacaagatatattaagtaaaagtagtgat
aataaaatgaaggctattgtaactacgattcaaagagagcaaaataaggcaattcgtaat
gaaaaatataaaaatttaattgtccaagggccagcaggaagtgggaaaacttctgttgct
ctgcataggattgcctatttattatataagcatcgtgatattataacagctaaaaatatc
gtgatattttctccgaataatatttttaatgattatatttctaacgttttacctcagctt
ggagaggataatatgttgcaaactacatttaaagaatatatgcataaagttttagaggag
atagatagtaaggaagattattgtgaaatgatggagaatatttttggagataagagtgag
cggtcttatgatactaggattaaaagtttaaaatttaagtcttctgtggattttgctaaa
ttattaaaagtatatatagaacacttaaaaaaaatgagtatggattttggagatattact
ttaggagaggaaactataatttcagcattagaaatacaggaattattttataaggactac
gagagtcttcctcttaagagaagattagaaaaactaagacgaagacttttatatcttata
gaaccttataaaaaaagattagttgataaaacagtgaaagaaatggaagagtctaatgaa
gagttagatgagaatgacatagttaaagtaagcaaatctttagtagatagggaaattaaa
cctataattaataaggtagaagaaaaaactaaatttgatttgatggattgttataagagc
ttttatgaaaatttagagggcttattaaaaatggcaaatattaaatatggcaatgaaagt
attagagaaataaaaagatataccttagaaaatttaagggctaaaaagataaattatgaa
gatcaaatagctttattgtttataaaaggagctgtaggtgatattccaaaaacagaagaa
gtaaagtatgtaattattgatgaagctcaagattatgcaccattgcagtatgaaattttc
aatcaattatttaacaaagcaaataaaacaatccttggtgatatatctcaatccattaat
ccttatatgaatgttggaagttataataatgttgtaaatatacttaaatctgaggatact
tctacaataaatttaactaaaagttataggtcaacaatggaaataactaaattttcgcgg
aaaatattaaataaggaaattaatgatgaatacgtgaaaaggagtggagattggccaagt
ttgactgggtttttagatgaaaaagatataaataaaagaatagttgaagaggtaaaagtt
tataagtgccatggccataattcaatagggataataacaaaaaatgttgatgaagcacag
agagtttacaattatttgagagataggattaacgttaaaatgattgtaagtgaggatgat
gactatgttaatgatattttagttattcctgcatatcttgctaaaggtttggaatttgat
gtggttattatatataatgccagtgatttaagatataaggatgaagaagatagattgtta
ctttatacagcttgtacaagagctcttcatgttttggatatattttatttaggaaatgta
tcaccattattaaagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (17)   
   Pfam (17)   
All databases (28)   

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