KEGG T03279: IX49

Cellulophaga lytica HI1: IX49_11545

Entry

IX49_11545        CDS       T03279

Name

(GenBank) transcription termination factor Rho

K03628

transcription termination factor Rho

Organism

clh Cellulophaga lytica HI1

Pathway

clh03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:clh00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IX49_11545
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:clh03021]
    IX49_11545
   03019 Messenger RNA biogenesis [BR:clh03019]
    IX49_11545
Transcription machinery [BR:clh03021]
Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     IX49_11545
Messenger RNA biogenesis [BR:clh03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     IX49_11545

SSDB

Motif

Pfam:

Rho_RNA_bind ATP-synt_ab Rho_N NACHT AAA_25 OB_RNB AAA_22 GGN Ndc1_Nup

Other DBs

NCBI-ProteinID:

AIM61124

Position

complement(2544378..2546036)

AA seq 552 aa
MFEISDLKAKKLPELQDIAKGLNVPKFKTLKKLDLVYQILDVQAANPKAVEEVVVKEPKP
TKAPASAKAKPAEKPKPRPVKRERVLREKPKPKAKEETTTEETKEPVAKKAPAPKKAPVA
KNTKPSAATEKKPVHRNNQGQQKNNGQHKNQNKKPQHQKNSRDKSNFDKDLKNRYREPEF
EFDSIIASEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLKTGDTVLGNVRP
PKEGEKYFPLIKVNKINGIDPQVVRDRVSFEHLTPLFPQEKFNLAEKQSNISNRIIDLFS
PIGKGQRGMIVAQPKTGKTMLLKDIANGIAANHPEVYQIVLLIDERPEEVTDMQRNVQGE
VIASTFDKEPSEHVRVANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLS
GGVDANALNKPKRFFGAARNIENGGSLSIIATALTETGSKMDEVIFEEFKGTGNMELQLD
RKISNRRIFPAIDLTSSSTRRDDLLLDENTIQRMWILRKYLADMNPVEAMEFIEQRIKQT
KNNEEFLLTMNQ

NT seq 1659 nt +upstreamnt +downstreamnt
atgtttgagatttccgatttaaaagcaaaaaagcttcctgaattacaggatattgcaaaa
ggtttaaatgttcctaagtttaaaacattaaaaaaactagatttggtataccaaatacta
gatgtacaagcagcaaaccctaaagcggtagaagaagttgttgttaaagaacctaaacca
accaaagcgccagcttctgcaaaagcaaaacctgcagaaaagcctaaaccacgaccggta
aaaagagagcgtgttttaagagaaaagccaaaacctaaggcaaaagaagaaacaactaca
gaagaaacaaaagagcctgttgcaaaaaaagcaccagctcctaaaaaagctcctgtagct
aaaaacacaaaaccttctgctgctactgaaaaaaaaccagtacacagaaacaaccaaggc
cagcaaaaaaataatggtcagcataaaaatcaaaacaaaaaaccacagcaccaaaaaaat
tctagagacaaaagtaattttgacaaggatttaaaaaatagatacagagagccagagttt
gagtttgatagtattattgctagtgaaggtgttttagatattatgcaagacggttatggt
tttttaagatcgtctgattacaactacctttcttctcctgatgatatttatgtttcacaa
tctcaaattagattatttggattaaaaacaggagatacggttttaggaaatgtgcgccca
cccaaggaaggcgaaaagtactttccgctaattaaagtaaataaaattaatggtatagat
ccacaggttgtacgtgaccgtgtttcttttgaacacttaacaccattatttcctcaagaa
aaatttaaccttgctgaaaagcagagtaatatttccaacagaattatagatttgttttca
ccaattggtaaaggacaacgtggtatgatcgttgcccagccaaaaactggtaaaacaatg
cttttaaaagacattgctaacggtattgcggcaaaccatccagaggtttatcaaattgta
ttactaatagatgaacgtccggaagaagttacagatatgcaacgtaatgttcaaggagaa
gtaattgcctctacttttgacaaggaaccatctgaacacgtacgtgtggctaatattgta
ctagaaaaagccaagagattggtagaatgtggccacgatgtggttattttattagattct
attacacgtttagcaagagcatataacacggtacaaccagcgtctggtaaagtattaagt
ggtggtgtagatgcaaacgcattaaacaaaccaaaacgtttctttggagctgctcgtaat
atagaaaacggaggttctttatctattatagctactgcacttacagaaactggctctaaa
atggacgaagttatctttgaagaatttaaaggaactggtaatatggagcttcagttagac
cgtaaaatatctaacagaagaatattccctgcaattgaccttacttcttcaagcacacgt
agagatgatcttttactagatgaaaacacaattcaacgtatgtggattttacgtaaatac
cttgcagatatgaaccctgtagaagctatggagtttatagaacaacgcattaaacaaact
aaaaacaatgaagagtttttattgacaatgaatcaataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (17)   

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